Annotation guidelines
Annotation Documentation
General Annotation Documentation
| Topic | Status | Last reviewed |
|---|---|---|
| General introduction to GO annotation - GO website | Current | 2021-01-27 |
| Elements of an annotation | Current | 2019-04-11 |
| Guide to GO Evidence Codes | Current | 2018-02-23 |
| GO_REFs index | GO metadata documentation | |
| Tips to Produce High Quality Annotations | Current | 2019-04-11 |
| Annotation Relations | Under review | 2023-09-05 |
| Annotation Extensions | ||
| Annotation Extensions - Summary | Current | 2021-06-10 |
| Annotation Extensions | To be reviewed | |
| Annotation Extension: Capturing cell and tissue types | To be reviewed | |
| Annotation Extension: Capturing participants | To be reviewed | |
Topic-Specific Guidelines
| Topic | Status | Last reviewed |
|---|---|---|
| Regulation of gene expression | ||
| Transcription factors annotation manual | Current | 2021-06-09 |
| MicroRNA_GO_annotation_manual | Current | 2023-07-19 |
| lncRNA_GO_annotation_manual | Current | 2023-07-19 |
| Chromatin remodeling | In progress | 2022-08-23 |
| Other Biological Processes | ||
| Apoptosis Curation Manual | To be reviewed | 2015-03-22 |
| Intracellular signaling cassettes | Draft | |
| Ligand-receptor pathways | To be reviewed | > 5 years old |
| Annotating regulation | To be reviewed | > 5 years old |
| Annotating downstream processes | Draft | |
| Guidelines for checkpoints | To be reviewed | |
| Response to x annotation guidelines | To be reviewed | |
| Multi-species processes | To be reviewed | |
| Molecular Function | ||
| Non-catalytic Molecular Functions | Current | 2022-05-19 |
| Binding | Draft | 2020-05-04 |
| Experiment-Specific Annotation Guidelines | ||
| Subcellular localization | Draft | |
| Phenotypes | Current | 2018-12-18 |
| Cellular components | ||
| Protein-containing complexes | Current | 2023-08-30 |
Noctua and GO-CAM
| Topic | Status | Last reviewed |
|---|---|---|
| GO-CAM Overview and Curation Strategy | Draft | 2023-05-24 |
| Noctua Curation Guide | Current | 2021- |
| ART Documentation | Current | 2021-05-26 |
| Importing MOD annotations into Noctua | Draft | 2021- |
Annotation quality control
| Topic | Status | Last reviewed |
|---|---|---|
| Annotation Review Request | Current | 2022-04-22 |
| Annotation maintenance | Current | 2020-08-20 |
| Proposal for Author Feedback for annotations | Draft | 2019-04-16 |
| QC procedures from contributing groups | Draft | 2019-03-14 |
Guidelines for new Groups/new submissions
| Topic | Status | Last reviewed |
|---|---|---|
| General guidance to submit annotations to the GO consortium | Under review | > 5 years ago |
Protein2GO specific processes
Focused annotation projects
- Kidney Development (2009/2010)
- Immunology (2006)
PAGES TO REVIEW
Intro to GO
- Submit_GO_annotations
- Beginning Annotation SOP
- Can we use the way this is presented ? GOA Training slides
- Guidelines_for_literature-based_curation
- Guidelines for electronic annotation methods
- MGI IEA pipeline 2008: Electronic - Harold and Evelyn
- Clark et al., 2005
- Contributing_GO_Annotations
- With_field
- Authoritative_Database_Groups
- Regulation [1]
- https://docs.google.com/document/d/1HyOW6oYu9ZxQlHRbZqIgv73L-_fdaXmFhtZPi83DBSU/edit
- http://gocwiki.geneontology.org/index.php/Annotation_Issues_and_Management
- http://wiki.geneontology.org/index.php/Annotation_Issues_and_Management
- GO annotation activities by central GO Consortium members
To delete, archive, or retire
To review