Annotation guidelines
General Annotation Documentation
Topic | Status | Last reviewed |
---|---|---|
General introduction to GO annotation - GO website | Current | 2021-01-27 |
Elements of an annotation | Current | 2019-04-11 |
Guide to GO Evidence Codes | Current | 2018-02-23 |
GO_REFs index | GO metadata documentation | |
Tips to Produce High Quality Annotations | Current | 2019-04-11 |
Annotation Relations | Under review | 2023-09-05 |
Annotation Extensions | ||
Annotation Extensions - Summary | Current | 2021-06-10 |
Annotation Extensions | To be reviewed | |
Annotation Extension: Capturing cell and tissue types | To be reviewed | |
Annotation Extension: Capturing participants | To be reviewed |
GO-CAM and Noctua
Topic | Status | Last reviewed |
---|---|---|
GO-CAM Overview and Curation Strategy | Current | 2023-05-31 |
Noctua Curation Guide | Current | 2024-10-30 |
ART Documentation | Current | 2021-05-26 |
Importing MOD annotations into Noctua | Draft | 2019-05-21 |
Topic-Specific Guidelines
Topic | Status | Last reviewed | |||
---|---|---|---|---|---|
Regulation of gene expression | |||||
Transcription factors annotation manual | Current | 2021-06-09 | |||
MicroRNA_GO_annotation_manual | Current | 2023-07-19 | |||
lncRNA_GO_annotation_manual | Current | 2024-05-31 | |||
SiRNA_GO_annotation_manual | Current | 2024-05-31 | |||
PiRNA_GO_annotation_manual | Current | 2024-05-31 | |||
Chromatin remodeling | In progress | 2022-08-23 | |||
Other Biological Processes | |||||
Apoptosis Curation Manual | To be reviewed | 2015-03-22 | |||
Intracellular signaling cassettes | Draft | ||||
Ligand-receptor pathways | To be reviewed | > 5 years old | |||
Annotating regulation | To be reviewed | > 5 years old | |||
Annotating downstream processes | Draft | ||||
Guidelines for checkpoints | To be reviewed | ||||
Response to x annotation guidelines | To be reviewed | ||||
Multi-species processes | To be reviewed | ||||
Molecular Function | |||||
Non-catalytic Molecular Functions | Current | 2022-05-19 | |||
Binding | Draft | 2020-05-04 | |||
[| NAD+, NADP+, NAD(P)+] | Current | 2025-01-28 | Experiment-Specific Annotation Guidelines | ||
Subcellular localization | Draft | ||||
Phenotypes | Current | 2018-12-18 | |||
Cellular components | |||||
Protein-containing complexes | Current | 2023-08-30 |
Annotation quality control
Topic | Status | Last reviewed |
---|---|---|
Annotation Review Request | Current | 2022-04-22 |
Annotation maintenance | Current | 2020-08-20 |
Proposal for Author Feedback for annotations | Draft | 2019-04-16 |
QC procedures from contributing groups | Draft | 2019-03-14 |
Guidelines for new Groups/new submissions
Topic | Status | Last reviewed |
---|---|---|
General guidance to submit annotations to the GO consortium | Under review | > 5 years ago |
Protein2GO specific processes
Focused annotation projects
- Kidney Development (2009/2010)
- Immunology (2006)
PAGES TO REVIEW
Intro to GO
- Submit_GO_annotations
- Beginning Annotation SOP
- Can we use the way this is presented ? GOA Training slides
- Guidelines_for_literature-based_curation
- Guidelines for electronic annotation methods
- MGI IEA pipeline 2008: Electronic - Harold and Evelyn
- Clark et al., 2005
- Contributing_GO_Annotations
- With_field
- Authoritative_Database_Groups
- Regulation [1]
- https://docs.google.com/document/d/1HyOW6oYu9ZxQlHRbZqIgv73L-_fdaXmFhtZPi83DBSU/edit
- http://gocwiki.geneontology.org/index.php/Annotation_Issues_and_Management
- http://wiki.geneontology.org/index.php/Annotation_Issues_and_Management
- GO annotation activities by central GO Consortium members
To delete, archive, or retire
To review