Annotation usage examples for each annotation extension relation: Difference between revisions
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UNDER REVIEW | UNDER REVIEW | ||
[https://github.com/geneontology/go-ontology/blob/master/src/ontology/extensions/gorel.obo GO relationships OBO file] | [https://github.com/geneontology/go-ontology/blob/master/src/ontology/extensions/gorel.obo GO relationships OBO file] (GOREL) | ||
Back to [http://wiki.geneontology.org/index.php/Annotation_Extension Annotation Extension] | Back to [http://wiki.geneontology.org/index.php/Annotation_Extension Annotation Extension] | ||
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==Relations== | ==Relations== | ||
[[ | [[acts on population of]] | ||
[[ | [[causally upstream of]] - align, although in AE graph the parent for this term is 'root node' | ||
[[ | [[exists during]] - not in RO: in AE graph the parent for this term is 'root node' | ||
[[ | [[happens during]] | ||
[[ | *[[has_input]] | ||
[[ | *[[has_output]] | ||
[[Annotation_Extension_Relation:occurs_in|occurs_in]] | |||
[[Annotation_Extension_Relation:part_of|part_of]] | |||
[[has small molecular inhibitor]] | |||
[[has small molecular activator]] | |||
[[results in formation_of]] | |||
[[Annotation_Extension_Relation:results_in_acquisition_of_features_of|results_in_acquisition_of_features_of]] - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent | |||
[[Annotation_Extension_Relation:results_in_development_of|results_in_development_of]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent for this term is 'has_participant' | |||
[[Annotation_Extension_Relation:results_in_movement_of|results_in_movement_of]] - in both RO and AE graph, however in RO there one additional parent, although does have 'has participant' as a grandparent, in AE graph the parent for this term is 'has_participant' | |||
[[Annotation_Extension_Relation:results_in_morphogenesis_of|results_in_morphogenesis_of]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is 'has_participant' | |||
[[Annotation_Extension_Relation: | [[Annotation_Extension_Relation:results_in_maturation_of|results_in_maturation_of]] - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent | ||
[[Annotation_Extension_Relation:results_in_commitment_to|results_in_commitment_to]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | [[Annotation_Extension_Relation:results_in_commitment_to|results_in_commitment_to]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | ||
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[[Annotation_Extension_Relation:results_in_specification_of|results_in_specification_of]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | [[Annotation_Extension_Relation:results_in_specification_of|results_in_specification_of]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | ||
[[Annotation_Extension_Relation:results_in_division_of|results_in_division_of]] - not in RO: in AE graph the parent for this term is 'has_participant' | |||
[[Annotation_Extension_Relation: | |||
==Relations in Protein2GO graph not in the lists above== | ==Relations in Protein2GO graph not in the lists above== | ||
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coincident_with | coincident_with | ||
has_target_end_location | has_target_end_location | ||
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** directly_negatively_regulates | ** directly_negatively_regulates | ||
** directly_positively_regulates | ** directly_positively_regulates | ||
[[Category:annotation extension]] | [[Category:annotation extension]] |
Latest revision as of 10:45, 13 February 2024
UNDER REVIEW
GO relationships OBO file (GOREL)
Back to Annotation Extension
Information on Folding and Unfolding
Annotation extension QuickGO graph [1]
In the list below the term available in the Annotation extension QuickGO graph ('AE graph') are compared to the term listed in RO
'Align' means these have the same parents
if the AE graph parent is listed then this means there is a difference between the RO term and the AE graph
Relations
causally upstream of - align, although in AE graph the parent for this term is 'root node'
exists during - not in RO: in AE graph the parent for this term is 'root node'
results_in_acquisition_of_features_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent
results_in_development_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent for this term is 'has_participant'
results_in_movement_of - in both RO and AE graph, however in RO there one additional parent, although does have 'has participant' as a grandparent, in AE graph the parent for this term is 'has_participant'
results_in_morphogenesis_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is 'has_participant'
results_in_maturation_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent
results_in_commitment_to - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
results_in_determination_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
results_in_specification_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
results_in_division_of - not in RO: in AE graph the parent for this term is 'has_participant'
Relations in Protein2GO graph not in the lists above
produced_by
adjacent_to
coincident_with
has_target_end_location
has_target_start_location
regulates
- negatively_regulates
- positively_regulates
- directly_regulates
- directly_negatively_regulates
- directly_positively_regulates