Annotation usage examples for each annotation extension relation: Difference between revisions

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Information on [[Folding and Unfolding]]
Information on [[Folding and Unfolding]]
Annotation extension QuickGO graph [https://www.ebi.ac.uk/QuickGO/annotationExtensionRelations]


==Relations==
==Relations==

Revision as of 15:34, 4 July 2019

Annotation Extension Relationship graph at EBI

GO relationships OBO file

Back to Annotation Extension

Information on Folding and Unfolding

Annotation extension QuickGO graph [1]

Relations

acts_on_population_of - in graph the parent for this term is 'has_participant'

has_agent - in graph the parent for this term is 'has_participant'

causally_upstream_of - correct

dependent_on - not in graph

exists_during - correct

happens_during - correct

has_participant Not for direct use in annotation extensions! - correct

  • has_regulation_target - in graph the parent for this term is 'regulates_o_has_participant', it does not have has_participant' parent
  • stabilizes - in graph the parent for this term is 'has_input'

in_absence_of maybe deprecated - not in graph

in_presence_of maybe deprecated - not in graph

independent_of maybe deprecated- not in graph

occurs_at - correct

occurs_in - correct

part_of - correct

activated_by - correct

inhibited_by - correct

results_in_acquisition_of_features_of - in graph the parent for this term is 'has_participant'

results_in_commitment_to - correct

results_in_determination_of - correct

results_in_development_of - in graph the parent for this term is 'has_participant'

results_in_movement_of - in graph the parent for this term is 'has_participant'

results_in_specification_of - correct

results_in_morphogenesis_of - in graph the parent for this term is 'has_participant'

results_in_formation_of - in graph the parent for this term is 'has_output'

results_in_maturation_of - in graph the parent for this term is 'has_participant'

results_in_division_of - in graph the parent for this term is 'has_participant'

Deprecated Relations

requires_regulation_by

modified_by

not_during

not_occurs_at

not_occurs_in

has_part

during

Relations in Protein2GO graph not in the lists above

dependent_on

produced_by

adjacent_to

coincident_with

has_end_location

has_start_location

has_target_end_location

has_target_start_location

regulates

  • negatively_regulates
  • positively_regulates
  • directly_regulates
    • directly_negatively_regulates
    • directly_positively_regulates

regulates_o_has_input

  • regulates_o_results_in_division_of
  • regulates_o_results_in_formation_of
  • regulates_o_results_in_maturation_of
  • regulates_o_results_in_movement_of
  • regulates_o_results_in_specification_of
  • regulates_o_results_in_acquisition_of_features_of
  • regulates_o_results_in_commitment_to
    • regulates_o_results_in_morphogenesis_of (parent has_regulation_target)
    • regulates_o_has_input (parent has_regulation_target)
      • regulates_transport_of (parent regulates_o_has_input)