Annotation usage examples for each annotation extension relation: Difference between revisions
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Information on [[Folding and Unfolding]] | Information on [[Folding and Unfolding]] | ||
Annotation extension QuickGO graph [https://www.ebi.ac.uk/QuickGO/annotationExtensionRelations] | Annotation extension QuickGO graph [https://www.ebi.ac.uk/QuickGO/annotationExtensionRelations] | ||
In the list below the term available in the Annotation extension QuickGO graph ('AE graph') are compared to the term listed in RO | |||
'Align' means these have the same parents | |||
if the AE graph parent is listed then this means there is a difference between the RO term and the AE graph | |||
==Relations== | ==Relations== |
Revision as of 15:39, 4 July 2019
Back to Annotation Extension
Information on Folding and Unfolding
Annotation extension QuickGO graph [1]
In the list below the term available in the Annotation extension QuickGO graph ('AE graph') are compared to the term listed in RO
'Align' means these have the same parents
if the AE graph parent is listed then this means there is a difference between the RO term and the AE graph
Relations
acts_on_population_of - in graph the parent for this term is 'has_participant'
has_agent - in graph the parent for this term is 'has_participant'
causally_upstream_of - correct
dependent_on - not in graph
- localization_dependent_on maybe deprecated - not in graph
- requires_sequence_feature maybe deprecated - not in graph
- requires_substance maybe deprecated - not in graph
exists_during - correct
happens_during - correct
has_participant Not for direct use in annotation extensions! - correct
- has_input - correct
- has_direct_input - correct
- has_output - correct
- has_regulation_target - in graph the parent for this term is 'regulates_o_has_participant', it does not have has_participant' parent
- regulates_expression_of - in graph the parent for this term is 'regulates_o_has_input'
- regulates_transcription_of - correct
- regulates_translation_of - correct
- stabilizes - in graph the parent for this term is 'has_input'
in_absence_of maybe deprecated - not in graph
in_presence_of maybe deprecated - not in graph
independent_of maybe deprecated- not in graph
occurs_at - correct
occurs_in - correct
part_of - correct
activated_by - correct
inhibited_by - correct
results_in_acquisition_of_features_of - in graph the parent for this term is 'has_participant'
results_in_commitment_to - correct
results_in_determination_of - correct
results_in_development_of - in graph the parent for this term is 'has_participant'
results_in_movement_of - in graph the parent for this term is 'has_participant'
results_in_specification_of - correct
results_in_morphogenesis_of - in graph the parent for this term is 'has_participant'
results_in_formation_of - in graph the parent for this term is 'has_output'
results_in_maturation_of - in graph the parent for this term is 'has_participant'
results_in_division_of - in graph the parent for this term is 'has_participant'
Deprecated Relations
Relations in Protein2GO graph not in the lists above
dependent_on
produced_by
adjacent_to
coincident_with
has_end_location
has_start_location
has_target_end_location
has_target_start_location
regulates
- negatively_regulates
- positively_regulates
- directly_regulates
- directly_negatively_regulates
- directly_positively_regulates
regulates_o_has_input
- regulates_o_results_in_division_of
- regulates_o_results_in_formation_of
- regulates_o_results_in_maturation_of
- regulates_o_results_in_movement_of
- regulates_o_results_in_specification_of
- regulates_o_results_in_acquisition_of_features_of
- regulates_o_results_in_commitment_to
- regulates_o_results_in_morphogenesis_of (parent has_regulation_target)
- regulates_o_has_input (parent has_regulation_target)
- regulates_transport_of (parent regulates_o_has_input)