Annotation usage examples for each annotation extension relation: Difference between revisions
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UNDER REVIEW | |||
[https://github.com/geneontology/go-ontology/blob/master/src/ontology/extensions/gorel.obo GO relationships OBO file] | [https://github.com/geneontology/go-ontology/blob/master/src/ontology/extensions/gorel.obo GO relationships OBO file] | ||
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==Relations== | ==Relations== | ||
[[Annotation_Extension_Relation:acts_on_population_of|acts_on_population_of]] | [[Annotation_Extension_Relation:acts_on_population_of|acts_on_population_of]] | ||
[[Annotation_Extension_Relation:causally_upstream_of|causally_upstream_of]] - align, although in AE graph the parent for this term is 'root node' | [[Annotation_Extension_Relation:causally_upstream_of|causally_upstream_of]] - align, although in AE graph the parent for this term is 'root node' | ||
[[Annotation_Extension_Relation:exists_during|exists_during]] - not in RO: in AE graph the parent for this term is 'root node' | [[Annotation_Extension_Relation:exists_during|exists_during]] - not in RO: in AE graph the parent for this term is 'root node' | ||
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[[Annotation_Extension_Relation:happens_during|happens_during]] - align both have 'root node' as parent | [[Annotation_Extension_Relation:happens_during|happens_during]] - align both have 'root node' as parent | ||
[[Annotation_Extension_Relation:has_participant|has_participant]] - | [[Annotation_Extension_Relation:has_participant|has_participant]] - not for direct annotation; used in the ontology | ||
*[[Annotation_Extension_Relation:has_input|has_input]] | |||
* [[Annotation_Extension_Relation:has_output|has_output]] | *[[Annotation_Extension_Relation:has_output|has_output]] | ||
:* [[Annotation_Extension_Relation:results_in_formation_of|results_in_formation_of]] - in both RO and AE graph, the parent for this term is 'has_output', although RO has additional parent terms too | :* [[Annotation_Extension_Relation:results_in_formation_of|results_in_formation_of]] - in both RO and AE graph, the parent for this term is 'has_output', although RO has additional parent terms too | ||
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[[Annotation_Extension_Relation:regulates_o_has_participant|regulates_o_has_participant]] - not in RO: in AE graph the parent for this term is 'root node' | [[Annotation_Extension_Relation:regulates_o_has_participant|regulates_o_has_participant]] - not in RO: in AE graph the parent for this term is 'root node' | ||
:* [[Annotation_Extension_Relation:regulates_o_has_input|regulates_o_has_input]] - not in RO: in AE graph the parent for this term is 'has_regulation_target' | :* [[Annotation_Extension_Relation:regulates_o_has_input|regulates_o_has_input]] - not in RO: in AE graph the parent for this term is 'has_regulation_target' | ||
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:::* [[Annotation_Extension_Relation:regulates_translation_of|regulates_translation_of]] - not in RO: in AE graph the parent for this term is 'regulates_expression_of' | :::* [[Annotation_Extension_Relation:regulates_translation_of|regulates_translation_of]] - not in RO: in AE graph the parent for this term is 'regulates_expression_of' | ||
[[Annotation_Extension_Relation:occurs_in|occurs_in]] - Align both have 'root node' as parent | [[Annotation_Extension_Relation:occurs_in|occurs_in]] - Align both have 'root node' as parent | ||
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[[Annotation_Extension_Relation:inhibited_by|inhibited_by]] - not in RO: in AE graph the parent for this term is 'root node' | [[Annotation_Extension_Relation:inhibited_by|inhibited_by]] - not in RO: in AE graph the parent for this term is 'root node' | ||
process has causal agent | |||
[[Annotation_Extension_Relation:results_in_commitment_to|results_in_commitment_to]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | [[Annotation_Extension_Relation:results_in_commitment_to|results_in_commitment_to]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | ||
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[[Annotation_Extension_Relation:results_in_specification_of|results_in_specification_of]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | [[Annotation_Extension_Relation:results_in_specification_of|results_in_specification_of]] - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node' | ||
[[Annotation_Extension_Relation:has_part|has_part]] | [[Annotation_Extension_Relation:has_part|has_part]] | ||
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[[Annotation_Extension_Relation:during|during]] | [[Annotation_Extension_Relation:during|during]] | ||
==Relations in Protein2GO graph not in the lists above== | |||
produced_by | produced_by | ||
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[[Category:annotation extension]] | [[Category:annotation extension]] |
Revision as of 08:40, 29 June 2022
UNDER REVIEW
Back to Annotation Extension
Information on Folding and Unfolding
Annotation extension QuickGO graph [1]
In the list below the term available in the Annotation extension QuickGO graph ('AE graph') are compared to the term listed in RO
'Align' means these have the same parents
if the AE graph parent is listed then this means there is a difference between the RO term and the AE graph
Relations
causally_upstream_of - align, although in AE graph the parent for this term is 'root node'
exists_during - not in RO: in AE graph the parent for this term is 'root node'
happens_during - align both have 'root node' as parent
has_participant - not for direct annotation; used in the ontology
- results_in_formation_of - in both RO and AE graph, the parent for this term is 'has_output', although RO has additional parent terms too
- results_in_acquisition_of_features_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent
- results_in_development_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent for this term is 'has_participant'
- results_in_movement_of - in both RO and AE graph, however in RO there one additional parent, although does have 'has participant' as a grandparent, in AE graph the parent for this term is 'has_participant'
- results_in_morphogenesis_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is 'has_participant'
- results_in_maturation_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent
- results_in_division_of - not in RO: in AE graph the parent for this term is 'has_participant'
regulates_o_has_participant - not in RO: in AE graph the parent for this term is 'root node'
- regulates_o_has_input - not in RO: in AE graph the parent for this term is 'has_regulation_target'
- regulates_expression_of - not in RO: in AE graph the parent for this term is 'regulates_o_has_input'
- regulates_transcription_of - not in RO: in AE graph the parent for this term is 'regulates_expression_of'
- regulates_translation_of - not in RO: in AE graph the parent for this term is 'regulates_expression_of'
occurs_in - Align both have 'root node' as parent
part_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
activated_by - not in RO: in AE graph the parent for this term is 'root node'
inhibited_by - not in RO: in AE graph the parent for this term is 'root node'
process has causal agent
results_in_commitment_to - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
results_in_determination_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
results_in_specification_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'
Relations in Protein2GO graph not in the lists above
produced_by
adjacent_to
coincident_with
has_end_location
has_start_location
has_target_end_location
has_target_start_location
regulates
- negatively_regulates
- positively_regulates
- directly_regulates
- directly_negatively_regulates
- directly_positively_regulates
regulates_o_has_input
- regulates_o_results_in_division_of
- regulates_o_results_in_formation_of
- regulates_o_results_in_maturation_of
- regulates_o_results_in_movement_of
- regulates_o_results_in_specification_of
- regulates_o_results_in_acquisition_of_features_of
- regulates_o_results_in_commitment_to
- regulates_o_results_in_morphogenesis_of (parent has_regulation_target)
- regulates_o_has_input (parent has_regulation_target)
- regulates_transport_of (parent regulates_o_has_input)