Aug2009 ontology report: Difference between revisions
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===I. Ontology Development=== | ===I. Ontology Development=== | ||
*SourceForge | *SourceForge | ||
**Items opened: | **Items opened: 81 | ||
**Items closed: 75 | **Items closed: 75 | ||
**Items still open: | **Items still open: 263 | ||
***assigned: | ***assigned: 206 | ||
***unassigned: 57 | ***unassigned: 57 | ||
*Content items resolved | *Content items resolved | ||
**New terms from | **New terms from [[SDB_2009|Society for Developmental Biology]] meeting (see [[Jul2009_ontology_report|July report]]) | ||
**Several SourceForge items resolved | **Several SourceForge items resolved | ||
Line 22: | Line 22: | ||
**Also continuing | **Also continuing | ||
***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products | ***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products | ||
***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; currently moving "sensu" information from synonyms to definitions (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009 | ***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; currently moving "sensu" information from synonyms to definitions (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009]] and [[Taxon-GO_Implementation_August_28th_2009_onwards]] for latest) | ||
***Work on branching organ development (David) | ***Work on branching organ development (David) | ||
***Discussion on transcription factor activity and DNA binding; will take to Sept. meeting ([http://fafner.stanford.edu/pipermail/ontology-editors/2009-August/000730.html email thread]) | ***Discussion on transcription factor activity and DNA binding; will take to Sept. meeting ([http://fafner.stanford.edu/pipermail/ontology-editors/2009-August/000730.html email thread]) | ||
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*OBO-Edit working group: | *OBO-Edit working group: | ||
**Continued testing of OBO-Edit 2.1 beta | **Continued testing of OBO-Edit 2.1 beta | ||
**See meeting minutes from August [[OEWG_20090804|4]], [[OEWG_20090813|13]] and [[OEWG_20090825|25], and [[OBO-Edit_development_Monthly_Report%2C_August_2009|monthly report]] | **See meeting minutes from August [[OEWG_20090804|4]], [[OEWG_20090813|13]] and [[OEWG_20090825|25]], and [[OBO-Edit_development_Monthly_Report%2C_August_2009|monthly report]] | ||
**ICBO presentations (see above) | **ICBO presentations (see above) | ||
Latest revision as of 09:16, 2 October 2009
Ontology Development & GO Editorial Office Report - August 2009
I. Ontology Development
- SourceForge
- Items opened: 81
- Items closed: 75
- Items still open: 263
- assigned: 206
- unassigned: 57
- Content items resolved
- New terms from Society for Developmental Biology meeting (see July report)
- Several SourceForge items resolved
- Content items in progress
- The plan to add internal cross-products to the go_write (and therefore also go_ext) file is in progress.
- Work continues on terms for kidney development
- Evaluating new link suggestions and mismatches from ChEBI cross-products
- Continuing to add function-process part-of links in gene_ontology_write.obo and gene_ontology_ext.obo
- Work continues on overhauling terms related to viruses
- Signal transduction overhaul is going very well; see Signaling_Meeting_Minutes_July_2009#3rd_August_2009 for latest notes (Jen and experts including Sandra Orchard)
- Also continuing
- Additional progress on Cellular component organization and biogenesis, in light of internal cross-products
- Taxon triggers; currently moving "sensu" information from synonyms to definitions (see Taxon-GO_Implementation_April_2009_onwards#5th_August_2009 and Taxon-GO_Implementation_August_28th_2009_onwards for latest)
- Work on branching organ development (David)
- Discussion on transcription factor activity and DNA binding; will take to Sept. meeting (email thread)
- Discussion on cellular component vs. cellular location; will take to Sept. meeting
- Quality control continues as usual - reports generated by Chris
- Regulation - also see above (David, Tanya)
- Multiple part_of parents (several GO curators, especially Tanya & David)
- Various SourceForge items
- Deprecated .ontology file format retired August 1st - see Managers_21Jan09 and GO_Timeline
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- OBO-Edit working group:
- Continued testing of OBO-Edit 2.1 beta
- See meeting minutes from August 4, 13 and 25, and monthly report
- ICBO presentations (see above)
- Advocacy/outreach (Jane, Jen)
- See monthly report
- Anything else
- GO bibliography has 2829 entries