Causally upstream of, negative effect: Difference between revisions

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== Overview ==
== Overview and Scope of Use ==
*The 'causally upstream of, negative effect' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when:
*The 'causally upstream of, negative effect' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when:
**the mechanism that relates the upstream process (BP or MF) to the downstream process (BP or MF) is understood
**the mechanism that relates the upstream process (BP or MF) to the downstream process (BP or MF) is understood
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== Examples of Usage ==
== Annotation Usage Guidelines ==
* '''(STILL NEEDS TO BE ENTERED)'''
'''(STILL NEEDS TO BE ENTERED)'''
* Standard Annotation
** Guidelines
*** What to capture
*** What not to capture
* Examples
 
* GO-CAM Annotation
** Guidelines
*** What to capture
*** What not to capture
* Examples
 
== Ontology Usage Guidelines ==


== Quality Control Checks ==
== Quality Control Checks ==
* Annotations can be validated using a Shape Expressions ([https://github.com/geneontology/go-shapes/blob/master/shapes/go-cam-shapes.shex ShEx]) representation of allowed relations between ontology terms.'''(STILL NEEDS TO BE ENTERED)'''
* Annotations can be validated using a Shape Expressions ([https://github.com/geneontology/go-shapes/blob/master/shapes/go-cam-shapes.shex ShEx]) representation of allowed relations between ontology terms.'''(STILL NEEDS TO BE ENTERED)'''
== Child Terms==


== Relations Ontology ==
== Relations Ontology ==
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== Review Status ==
== Review Status ==
Modified on September 29, 2022
Last reviewed: October 31, 2022 David
Last reviewed:  


[http://wiki.geneontology.org/index.php/Annotation_Relations Back to: Annotation Relations]
[http://wiki.geneontology.org/index.php/Annotation_Relations Back to: Annotation Relations]

Revision as of 10:13, 31 October 2022

Overview and Scope of Use

  • The 'causally upstream of, negative effect' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when:
    • the mechanism that relates the upstream process (BP or MF) to the downstream process (BP or MF) is understood
    • the activities of the gene products in the upstream process occur before events in the downstream process
    • the execution of the upstream event decreases the execution of the downstream event


Annotation Usage Guidelines

(STILL NEEDS TO BE ENTERED)

  • Standard Annotation
    • Guidelines
      • What to capture
      • What not to capture
  • Examples
  • GO-CAM Annotation
    • Guidelines
      • What to capture
      • What not to capture
  • Examples

Ontology Usage Guidelines

Quality Control Checks

  • Annotations can be validated using a Shape Expressions (ShEx) representation of allowed relations between ontology terms.(STILL NEEDS TO BE ENTERED)

Child Terms

Relations Ontology

(STILL NEEDS TO BE ENTERED)

Review Status

Last reviewed: October 31, 2022 David

Back to: Annotation Relations

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