Causally upstream of, positive effect: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
Line 13: | Line 13: | ||
== Annotation Usage Guidelines== | == Annotation Usage Guidelines== | ||
* Standard Annotation | * Standard Annotation | ||
** What to capture | |||
** What not to capture | |||
** Usage Examples | ** Usage Examples | ||
***This relation should not be used for conventional annotations. To capture this information, curators should create a GO_CAM model in the Noctua tool. | ***This relation should not be used for conventional annotations. To capture this information, curators should create a GO_CAM model in the Noctua tool. | ||
Line 34: | Line 36: | ||
== Review Status == | == Review Status == | ||
Reviewed on | Reviewed on Nov 2, 2022 DavidH | ||
[http://wiki.geneontology.org/index.php/Annotation_Relations Back to: Annotation Relations] | [http://wiki.geneontology.org/index.php/Annotation_Relations Back to: Annotation Relations] |
Revision as of 10:11, 2 November 2022
Overview and Scope of Use
- The 'causally upstream of, positive effect' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when:
- the mechanism that relates the upstream process (BP or MF) to the downstream process (BP or MF) is understood
- the activities of the gene products in the upstream process occur before events in the downstream process
- in order for the downstream process to occur normally, the upstream process needs to occur
- Domain- Domain refers to the ontology terms that can be further specified with the relation.
- Any biological process
- Any molecular function
- Range- Range describes the ontology terms that can be used to further specify the domain using the relation.
- Any biological process
- Any molecular function
Annotation Usage Guidelines
- Standard Annotation
- What to capture
- What not to capture
- Usage Examples
- This relation should not be used for conventional annotations. To capture this information, curators should create a GO_CAM model in the Noctua tool.
- GO-CAM Annotation
- Usage Examples
- A peptidase activity that processes a signaling ligand.
- Usage Examples
Ontology Usage Guidelines
- This relation is not used in the ontology.
Quality Control Checks
- Annotations can be validated using a Shape Expressions (ShEx) representation of allowed relations between ontology terms.
Child Terms
Cross Reference to Relation Ontology (RO)
causally upstream of, positive effect
Review Status
Reviewed on Nov 2, 2022 DavidH