Compositional Term Submission Tool: Difference between revisions
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(aka [[TermGenie]]) | |||
(aka TermGenie) | |||
Project lead: Chris | Project lead: Chris | ||
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The compositional term request system allows annotators to use a web template system to instantaneously get the term they require, provided it conforms to an existing pre-determined template. A reasoner is used to place the term automatically in the hierarchy. | The compositional term request system allows annotators to use a web template system to instantaneously get the term they require, provided it conforms to an existing pre-determined template. A reasoner is used to place the term automatically in the hierarchy. | ||
Documentation for the system is available here: [[TermGenie]] | |||
== Groups == | == Groups == |
Revision as of 12:18, 15 December 2010
(aka TermGenie)
Project lead: Chris
Coordinates with: ontology-editors
Purpose
An increasing number of terms coming in from sourceforge are automatable compositional terms - particularly regulation terms. Ontology editors waste time performing manual tasks that could be automated, and curators experience a bottleneck during annotation.
The compositional term request system allows annotators to use a web template system to instantaneously get the term they require, provided it conforms to an existing pre-determined template. A reasoner is used to place the term automatically in the hierarchy.
Documentation for the system is available here: TermGenie
Groups
Project Dependencies
- Full_Text_Indexing (soft dependency)
- Transition to OWL (for #v2)
Status
#v1 is available to curators, currently on regulation requests are live
Deliverables
v1
v1 is obo-format dependent, uses a custom reasoner, and relies on various ad-hoc scripts
v1 report
A report on the v1 implementation is available:
v2
v2 will be a port of #v1
- implemented in Java
- works off of OBO or OWL files
- uses OWLAPIv3
- runs in TomCat
- uses OWL reasoners
Dependencies: Transition to OWL
Reasoner Benchmarks
Need to test various OWL reasoners, simulate evolution of GO
Feasibility Study
Determine feasibility of java version