Constitutively upstream of: Difference between revisions
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== Overview == | == Overview and Scope of Use== | ||
*The 'constitutively upstream of' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when: | *The 'constitutively upstream of' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when: | ||
**The mechanism that relates the upstream event (MF or BP) to the downstream event (MF or BP) is understood | **The mechanism that relates the upstream event (MF or BP) to the downstream event (MF or BP) is understood | ||
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**The execution of the upstream event is approximately constant | **The execution of the upstream event is approximately constant | ||
== | == Annotation Usage Guidelines == | ||
'''(STILL NEEDS TO BE ENTERED)''' | |||
* Standard Annotation | |||
** Guidelines | |||
*** What to capture | |||
*** What not to capture | |||
** Examples | |||
*GO-CAM | |||
** Guidelines | |||
*** What to capture | |||
*** What not to capture | |||
** Examples | |||
== Quality Control Checks == | == Quality Control Checks == | ||
'''(STILL NEEDS TO BE ENTERED)''' | '''(STILL NEEDS TO BE ENTERED)''' | ||
* Annotations can be validated using a Shape Expressions ([https://github.com/geneontology/go-shapes/blob/master/shapes/go-cam-shapes.shex ShEx]) representation of allowed relations between ontology terms. | * Annotations can be validated using a Shape Expressions ([https://github.com/geneontology/go-shapes/blob/master/shapes/go-cam-shapes.shex ShEx]) representation of allowed relations between ontology terms. | ||
== Child Terms == | |||
== Relations Ontology == | == Relations Ontology == | ||
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== Review Status == | == Review Status == | ||
Last reviewed: | Last reviewed: October 31, 2022 | ||
Revision as of 09:57, 31 October 2022
Overview and Scope of Use
- The 'constitutively upstream of' relation is used to relate GO Biological Processes (BP) and/or GO Molecular Functions (MF) when:
- The mechanism that relates the upstream event (MF or BP) to the downstream event (MF or BP) is understood
- The activities in the upstream event occur before events in the downstream event
- The upstream event has an effect on the execution of the downstream event
- The execution of the upstream event is approximately constant
Annotation Usage Guidelines
(STILL NEEDS TO BE ENTERED)
- Standard Annotation
- Guidelines
- What to capture
- What not to capture
- Examples
- Guidelines
- GO-CAM
- Guidelines
- What to capture
- What not to capture
- Examples
- Guidelines
Quality Control Checks
(STILL NEEDS TO BE ENTERED)
- Annotations can be validated using a Shape Expressions (ShEx) representation of allowed relations between ontology terms.
Child Terms
Relations Ontology
(STILL NEEDS TO BE ENTERED)
Review Status
Last reviewed: October 31, 2022