DKP Sept 20, 2021- annotation documentation
Pascale - preliminary work - to be discussed
Pages updated for Swiss-Pot extension training
- Annotation_Extension - removed most content; need to decide what is relevant to add
- Annotation_Extension_Relation:has_input
- Annotation_Extension_Relation:has_output
- Annotation_Extension_Relation:occurs_in
Pages redirected to the Annotation main page because they referred to deprecated relations with respect to GO-CAM or P2GO usage
- Annotation_Extension_Relation:dependent_on
- Annotation_Extension_Relation:has_regulation_target
- Annotation_Extension_Relation:has_direct_input
- Annotation_Extension_Relation:has_indirect_input
- Annotation Extension Relation:in presence of
- Annotation_Extension_Relation:regulates_transcription_of
- Annotation Extension Relation:regulates translation of
- Annotation_Extension_Relation:requires_regulation_by
- Annotation_Extension_Relation:requires_regulator
- Annotation_Extension_Relation:stabilizes
- Directly_negatively_regulates
- Directly_positively_regulates
To be removed from P2GO
Relation | number of annotations in P2GO
- regulates_o_has_agent | 0
- regulates_o_results_in_division_of | 0
- regulates_transcription_of |0
- stabilizes | 0
- regulates_translation_of | 7
- inhibited_by | 2
- regulates_translation_of | 7
- directly_regulates | 15
- has_regulation_target | 42
- directly_negatively_regulates | 40
- activated_by | 41
- has_agent | 44
- directly_positively_regulates | 54
- regulates_transport_of | 109
- has_participant | 2766 - guidelines say 'not for direct annotation'
For next time
- review pages above time
- discuss pipe vs comma separated values -> change to single annotations