Data Capture Call 2016-08-10: Difference between revisions
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* Has everyone looked over and contributed their comments to the ''Request a paper for Annotation'' form? Or is this the finalized form and are we ready to make it available to the public? The form can be found at https://goo.gl/zzUkzg | * Has everyone looked over and contributed their comments to the ''Request a paper for Annotation'' form? Or is this the finalized form and are we ready to make it available to the public? The form can be found at https://goo.gl/zzUkzg | ||
* | * There are a number of pending ToDos from previous calls. Have these been addressed? | ||
** From [http://wiki.geneontology.org/index.php/Data_Capture_Call_2016-05-10 2016-05-10] and [http://wiki.geneontology.org/index.php/Data_Capture_Call_2016-06-08 2016-06-08]: | |||
*** Update the '''[http://geneontology.org/contribute-annotations-adhoc 'Ad hoc' contributions page]''' with the form Ruth & Seth designed: | |||
**** Seth has already looked into sending the current results (table format) to a GitHub issue, working on a scraper to pick up the data on a Google Spreadsheet. Now we need to make a little time to finalize the formats/what we want to capture. | |||
**** Seth is also working on this [https://github.com/geneontology/contributor-data-pool Contributor data pool document] on Github, as an experimental, freestanding structured resource for external data contributors. Have these discussions already taken place? | |||
***** Discuss how to keep track of the quality of the data we consume: Syntactic check ? Semantic check ? Check the biology manually ? | |||
*****Discuss maintenance of datasets in the long term: what happens when annotations become stale and submitting groups have disappeared? | |||
*** Regarding the '''scale of submissions''', ToDo: At the beginning of the flowchart, add a question about whether groups plan to submit a “one-time” dataset or recurring submissions. | |||
*** Regarding '''training material''', ToDo: let’s gather materials currently available from Claire, Ruth, Melanie, and Moni. | |||
*** '''Flowchart''': Kimberly has worked on simplifying the [https://docs.google.com/presentation/d/1K6U2L-F7rmGEPBAfkeF_GobinTKTE1j6P8bfLM6huPY/edit#slide=id.g115cdca222_2_0 flowchart]. A few questions remain: | |||
**** Step 1: check what exists, centralized place QuickGO/AmiGO | |||
**** Step 2: information is complete / nonexistent / incomplete |
Revision as of 10:49, 10 August 2016
Back to Data Capture Working Group
Agenda
- Has everyone looked over and contributed their comments to the Request a paper for Annotation form? Or is this the finalized form and are we ready to make it available to the public? The form can be found at https://goo.gl/zzUkzg
- There are a number of pending ToDos from previous calls. Have these been addressed?
- From 2016-05-10 and 2016-06-08:
- Update the 'Ad hoc' contributions page with the form Ruth & Seth designed:
- Seth has already looked into sending the current results (table format) to a GitHub issue, working on a scraper to pick up the data on a Google Spreadsheet. Now we need to make a little time to finalize the formats/what we want to capture.
- Seth is also working on this Contributor data pool document on Github, as an experimental, freestanding structured resource for external data contributors. Have these discussions already taken place?
- Discuss how to keep track of the quality of the data we consume: Syntactic check ? Semantic check ? Check the biology manually ?
- Discuss maintenance of datasets in the long term: what happens when annotations become stale and submitting groups have disappeared?
- Regarding the scale of submissions, ToDo: At the beginning of the flowchart, add a question about whether groups plan to submit a “one-time” dataset or recurring submissions.
- Regarding training material, ToDo: let’s gather materials currently available from Claire, Ruth, Melanie, and Moni.
- Flowchart: Kimberly has worked on simplifying the flowchart. A few questions remain:
- Step 1: check what exists, centralized place QuickGO/AmiGO
- Step 2: information is complete / nonexistent / incomplete
- Update the 'Ad hoc' contributions page with the form Ruth & Seth designed:
- From 2016-05-10 and 2016-06-08: