Data Modeling and File Formats: Difference between revisions
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Project leads: Seth Carbon and Amelia Ireland | |||
Coordination: | |||
* [[:Category:OBO-Edit_working_group|OWEG]] (obo format) | |||
* Annotation and Ref Genome Group (GAF) | |||
== OBO File Format == | == OBO File Format == | ||
One of the tasks of the SWUG is to specify the OBO format used by the GO for the representation and exchange of the ontology. The current recommended format is 1.2. obof1.4 will be a backwards and forwards compatible change that will introduce additional tags and clarify obo/owl exchange. | |||
* http://www.geneontology.org/GO.format.obo-1_2.shtml | * http://www.geneontology.org/GO.format.obo-1_2.shtml | ||
* http://www.geneontology.org/GO.format.obo-1_4.shtml | * http://www.geneontology.org/GO.format.obo-1_4.shtml (draft) | ||
== Gene Association File (GAF) Format == | == Gene Association File (GAF) Format == | ||
* [[GAF]] | The SWUG is in charge of specifying the tab-delimited file format used for the exchange of annotation data | ||
* http://www.geneontology.org/GO.format.annotation.shtml | |||
** http://www.geneontology.org/GO.format.gaf-1_0.shtml | |||
** http://www.geneontology.org/GO.format.gaf-2_0.shtml | |||
See also: [[GAF]] | |||
== GO Database Schema == | == GO Database Schema == | ||
* [[GO Database Schema]] | * [[GO Database Schema]] | ||
== GO Rules Format == | |||
* [[GO_Rules]] | |||
== Representation of GO in OWL == | == Representation of GO in OWL == | ||
* [[GO in OWL]] | * [[GO in OWL]] | ||
== Lego Proposal == | |||
* TODO | |||
[[Category:SWUG Projects]] | [[Category:SWUG Projects]] |
Latest revision as of 22:03, 8 August 2010
Project leads: Seth Carbon and Amelia Ireland
Coordination:
- OWEG (obo format)
- Annotation and Ref Genome Group (GAF)
OBO File Format
One of the tasks of the SWUG is to specify the OBO format used by the GO for the representation and exchange of the ontology. The current recommended format is 1.2. obof1.4 will be a backwards and forwards compatible change that will introduce additional tags and clarify obo/owl exchange.
- http://www.geneontology.org/GO.format.obo-1_2.shtml
- http://www.geneontology.org/GO.format.obo-1_4.shtml (draft)
Gene Association File (GAF) Format
The SWUG is in charge of specifying the tab-delimited file format used for the exchange of annotation data
See also: GAF
GO Database Schema
GO Rules Format
Representation of GO in OWL
Lego Proposal
- TODO