GO Editorial Office Report - December 2005
SourceForge items
Items opened 41
Closed by editorial office 71
(note: 1 SF item closed outside GO-Ed. this month; see end of
report for details and for non-GO-Ed contributors to items we
closed)
Items in progress, assigned to editorial office 74
See monthly report in CVS for ontology statistics.
Content topics in progress:
Cell cycle (Amelia, with Val Wood, PSU)
Metamorphosis (Jen, with others including MA, Russ Collins, FB)
Pollination (Amelia, with several plant people including TAIR
curators)
Two function terms for TAIR (Amelia, with Suparna Mundodi, TAIR)
Topics from content meeting; see below
Complete is_a paths for cellular component (Jane, with Chris M)
Content topics resolved:
Behavior (Amelia, with Erich Schwarz, WB)
Blood pressure regulation (Amelia, with Jane, and motivated and
guided by David Hill, MGI)
Branching morphogenesis (Jen)
Cellular component additions for TAIR/MetaCyc; includes univocal
membrane/envelope distinction (Midori, with others including
Peifen Zhang at TAIR and Michelle Gwinn at TIGR)
Locomotion/behavior relationships (Midori, with several others)
Neurogenesis (Jen)
Several function terms for TAIR (Amelia, with Suparna Mundodi, TAIR)
Several small things for SourceForge items
Conferences/meetings
Content meeting (TIGR, Nov. 15-16)
minutes (Amelia, Jane)
ongoing work as described in Nov 2005 report (immunology,
self/non-self processes, interaction between organisms, cell
death)
Bio-Curator meeting, Asilomar Dec. 8-11 (Midori)
UK chicken/cow meeting (Jen; see annotation outreach below)
Preparations for PAG (Jen)
GO Survey
- further analysis in progress (Jane, with Rex Chisholm)
Last bits of paperwork for grant year 6 (Midori)
Comments on drafts for 5-year renewal (Midori, Jen)
Mips2go mapping update almost done (Jane) (note: finished as of Jan. 10)
Multifun2go mapping updated (Jane)
Annotation outreach (Jen)
Farm animal interest group started
Involved in drafting new ChickGO Consortium plans
Discussion with Shane Burgess about status of AgBase
Attended UK chicken and cow meeting (Sanger) to discuss annotation
possibilities
Some updates to web pages (Amelia)
Scripts (Amelia)
Mailing list quiet
GO Bibliography now has 677 entries
Appendix: input from others on SF items closed this month
1111861, 1322922 - Val Wood (PSU), Erich Schwarz (WB)
1177217, 1307099, 1307327 - Several MOD curators, especially Doug Howe
(ZFIN), Carol Bastiani, Erich Schwarz (WB), David Hill (MGI)
1199971 - Russ Collins (FB)
1284217 - Peifen Zhang (TAIR), Michelle Gwinn (TIGR), a bit from other
MOD curators
1288640 - David Hill (MGI)
1348285 - Michelle Gwinn (TIGR)
1353409 - Michelle Gwinn (TIGR), Dr. Frederic Partensky
1365638 - Pascale Gaudet (DDB)
1234766 - Pascale Gaudet (DDB), Becky Foulger (UniProt)
1366304 - Alex Diehl (MGI)
1368335 - Alex Diehl (MGI)
1369320 - Val Wood (PSU)
1370167 - David Hill (MGI), Doug Howe (ZFIN)
1380320 - Val Wood (PSU)
1027565 - Becky Foulger (did the work while at FB); Victoria Petri
(RGD)