Derived files in CVS: Difference between revisions
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Note: I (midori) don't know anything about this one beyond observing that it exists. | Note: I (midori) don't know anything about this one beyond observing that it exists. | ||
== Pipeline == | |||
== Files derived from annotations == | == Files derived from annotations == | ||
Revision as of 19:36, 11 April 2008
Every derived file checked into cvs should be registered here. Please note update frequency, manual vs automatic, program + version used etc
Files derived from the ontology
*.ontology files
Location: go/ontology/*.ontology
Mechanism: obo2flat v1.1 via cron at Stanford
Tests:
slims
Location: go/GO_slims/*.{obo,go}
Mechanism: Amelia runs oe / obo2obo? Periodicity? obo2flat for obo->go
Tests:
lists of terms/ids
Location: go/doc/GO.terms_alt_ids
Location: go/doc/GO.terms_and_ids
Mechanism: Midori runs script to generate files; manual CVS commit; approx. daily.
Note: As far as I know, Amelia has a plan to generate these files from the database and commit them in some automated fashion. I'm just waiting to hear form someone that I can stop updating manually ... (midori)
Location: go/doc/GO.terms_ids_obs
Note: I (midori) don't know anything about this one beyond observing that it exists.