Derived files in CVS

Every derived file checked into cvs should be registered here. Please note update frequency, manual vs automatic, program + version used etc

Files derived from the ontology

*.ontology files

Location: go/ontology/*.ontology

Mechanism: obo2flat v1.1 via cron at Stanford

Frequency: nightly

Tests:

slims

Location: go/GO_slims/*.{obo,go}

Mechanism: Amelia runs oe / obo2obo? Periodicity?

obo2flat for obo->go, cron at SGD, M,W,Sa

Tests:

lists of terms/ids

Location: go/doc/GO.terms_alt_ids
Location: go/doc/GO.terms_and_ids

Mechanism: Midori runs script to generate files; manual CVS commit; approx. daily.

Note: As far as I know, Amelia has a plan to generate these files from the database and commit them in some automated fashion. I'm just waiting to hear form someone that I can stop updating manually ... (midori)

Location: go/doc/GO.terms_ids_obs

Note: I (midori) don't know anything about this one beyond observing that it exists.