Example Solr Queries: Difference between revisions

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  fq=evidence_type:"IEA"
  fq=evidence_type:"IEA"


==Annotations to both "macromolecule biosynthetic process" and "cellular response to stress" (first 10, facets displayed)==
==Annotations to both "macromolecule biosynthetic process" and "cellular response to stress" (first 10)==


URL
URL (facets displayed)
  http://skewer.lbl.gov:8080/solr/select?qt=standard&indent=on&wt=json&version=2.2&rows=10&start=0&fl=*%2Cscore&facet=true&facet.field=document_category&facet.field=type&facet.field=evidence_type&facet.field=evidence_closure&facet.field=source&facet.field=taxon&facet.field=isa_partof_label_closure&facet.field=annotation_extension_class_label_closure&fq=&q=*:*&fq=document_category:"annotation"&fq=isa_partof_label_closure:"macromolecule biosynthetic process"&fq=isa_partof_label_closure:"cellular response to stress"
  http://skewer.lbl.gov:8080/solr/select?qt=standard&indent=on&wt=json&version=2.2&rows=10&start=0&fl=*%2Cscore&facet=true&facet.field=document_category&facet.field=type&facet.field=evidence_type&facet.field=evidence_closure&facet.field=source&facet.field=taxon&facet.field=isa_partof_label_closure&facet.field=annotation_extension_class_label_closure&fq=&q=*:*&fq=document_category:"annotation"&fq=isa_partof_label_closure:"macromolecule biosynthetic process"&fq=isa_partof_label_closure:"cellular response to stress"


GOOSE
GOOSE (no facets shown)
q=*:*
fq=document_category:"annotation"
fq=isa_partof_label_closure:"macromolecule biosynthetic process"
fq=isa_partof_label_closure:"cellular response to stress"

Revision as of 04:17, 1 December 2011

Overview

This page has examples of various kinds of queries possible on the GO Solr document store (GOlr),

Usage

The current testing ground for GOlr is:

http://skewer.lbl.gov:8080/solr/

This is a naked Solr server; you can access it with any http client, including a web browser. In addition, there is an experimental version of GOOSE that can talk to Solr (select a Solr mirror from the list):

http://amigo2.berkeleybop.org/cgi-bin/amigo2/goose

This method is currently a little slower, but may make learning a little bit easier.

Example Queries

All documents (first 10)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=10&indent=on&q=*:*&start=0

GOOSE

q=*:*

All documents (first 20)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=20&indent=on&q=*:*&start=0

GOOSE

q=*:*
rows=20

IEA Annotations from TAIR (first 10)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=10&indent=on&q=*:*&fq=document_category:annotation&start=0

GOOSE

q=*:*
fq=document_category:annotation
fq=source:"TAIR"
fq=evidence_type:"IEA"

Annotations to both "macromolecule biosynthetic process" and "cellular response to stress" (first 10)

URL (facets displayed)

http://skewer.lbl.gov:8080/solr/select?qt=standard&indent=on&wt=json&version=2.2&rows=10&start=0&fl=*%2Cscore&facet=true&facet.field=document_category&facet.field=type&facet.field=evidence_type&facet.field=evidence_closure&facet.field=source&facet.field=taxon&facet.field=isa_partof_label_closure&facet.field=annotation_extension_class_label_closure&fq=&q=*:*&fq=document_category:"annotation"&fq=isa_partof_label_closure:"macromolecule biosynthetic process"&fq=isa_partof_label_closure:"cellular response to stress"

GOOSE (no facets shown)

q=*:*
fq=document_category:"annotation"
fq=isa_partof_label_closure:"macromolecule biosynthetic process"
fq=isa_partof_label_closure:"cellular response to stress"