Extensions/x-metazoan-anatomy: Difference between revisions

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'''NOTE: THE PRIMARY VERSION OF THIS EXTENSION FILE IS NOW AN OWL FILE IN SVN. See:''' [[Ontology_extensions#Status]]
For more on ontology extensions, see:''' [[Ontology_extensions#Status]]


== URLs ==


[http://uberon.org Uberon] is a multi species anatomy ontology.
* http://purl.obolibrary.org/obo/go/extensions/x-metazoan-anatomy
 
* http://purl.obolibrary.org/obo/go/extensions/x-metazoan-anatomy.owl
We need a multi-species anatomy ontology to be able to define many developmental terms in GO that cover multiple species
* http://uberon.org


Example:
Example:
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   intersection_of: GO:0048646 ! anatomical structure formation
   intersection_of: GO:0048646 ! anatomical structure formation
   intersection_of: OBO_REL:results_in_formation_of UBERON:0001049 ! neural tube
   intersection_of: OBO_REL:results_in_formation_of UBERON:0001049 ! neural tube
== Availability ==
Logical definitions:
* [http://www.geneontology.org/scratch/xps/biological_process_xp_uber_anatomy.obo biological_process_xp_uber_anatomy.obo]
== Methods ==
The Uberon ontology was generated by combining all major metazoan anatomy ontologies automatically and then curating the results. So far curation has been done by CJM and Melissa Haendel. The curation is still incomplete so there are errors in Uberon.
The XP set was generated using [[Obol]] and then curated.




Revision as of 22:05, 12 November 2012

For more on ontology extensions, see: Ontology_extensions#Status

URLs

Example: 


 [Term]
 id: GO:0001841 ! neural tube formation
 intersection_of: GO:0048646 ! anatomical structure formation
 intersection_of: OBO_REL:results_in_formation_of UBERON:0001049 ! neural tube


Tracker Items

The tracker items in here were generated by running the reasoner over this xp set

This tracker item deals with some of the disjoint_from statements that are required for the logical definitions:

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