Extensions/x-multi-organism: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 6: | Line 6: | ||
* non-conforming terms | * non-conforming terms | ||
It uses a small ontology of "organism roles" - parasite, symbiont etc | It uses a small ontology of "organism roles" - parasite, symbiont etc - see the bottom of the xp obo file | ||
See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory | See the [http://www.geneontology.org/scratch/xps/ go/scratch/xps] directory | ||
Revision as of 15:40, 9 May 2008
This XP augments XP:biological_process_xp_regulation
It "catches" some of the MOPs that do not conform to the strict "+/- regulation of PROCESS" grammar. The obol grammar is still incomplete, and there will be certain patterns that are not caught:
- regulation of qualities, such as levels of RNA in host
- non-conforming terms
It uses a small ontology of "organism roles" - parasite, symbiont etc - see the bottom of the xp obo file
See the go/scratch/xps directory
- xp obo file
- imports file - point oboedit at this
Missing Link Report:
(not yet updated automatically)
This has some false positives. It is also redundant with the report generated here:
Ignore the anonymous classes in this report