https://wiki.geneontology.org/index.php?title=External_ontologies&feed=atom&action=historyExternal ontologies - Revision history2024-03-29T08:47:55ZRevision history for this page on the wikiMediaWiki 1.40.0https://wiki.geneontology.org/index.php?title=External_ontologies&diff=84510&oldid=prevPascale at 14:44, 10 February 20232023-02-10T14:44:20Z<p></p>
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</table>Pascalehttps://wiki.geneontology.org/index.php?title=External_ontologies&diff=82825&oldid=prevPeterd: /* ChEBI */2022-07-18T13:28:10Z<p><span dir="auto"><span class="autocomment">ChEBI</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:28, 18 July 2022</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=ChEBI=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=ChEBI=</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. ChEBI is used to describe compounds in GO, as well as in RHEA. Compounds used in GO are the forms present at pH 7, the physiological pH under most conditions in most organisms annotated with GO. The pH is not 7.3 in all organelles, organs and organisms, but this was chosen as the most common form of the compounds. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. ChEBI is used to describe compounds in GO, as well as in RHEA. Compounds used in GO are the forms present at pH 7<ins style="font-weight: bold; text-decoration: none;">.3</ins>, the physiological pH under most conditions in most organisms annotated with GO. The pH is not 7.3 in all organelles, organs and organisms, but this was chosen as the most common form of the compounds. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To find which form of a chemical is present at pH7.3, go to [https://www.rhea-db.org/ www.rhea-db.org] and search for the CHEBI ID of the compound you have or for the compound name. Choose one of the reactions and scroll down to "reaction participants"; follow the link to ChEBI to get the compound name and ID. </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To find which form of a chemical is present at pH7.3, go to [https://www.rhea-db.org/ www.rhea-db.org] and search for the CHEBI ID of the compound you have or for the compound name. Choose one of the reactions and scroll down to "reaction participants"; follow the link to ChEBI to get the compound name and ID. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Missing chemicals should be added to the GO imports file. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Missing chemicals should be added to the GO imports file.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Uberon=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Uberon=</div></td></tr>
</table>Peterdhttps://wiki.geneontology.org/index.php?title=External_ontologies&diff=82797&oldid=prevPascale: Created page with "GO uses external ontologies for the logical definitions of some terms. =ChEBI= Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. ChEBI is used to describe compounds in GO, as well as in RHEA. Compounds used in GO are the forms present at pH 7, the physiological pH under most conditions in most organisms annotated with GO. The pH is not 7.3 in all organelles, organs and orga..."2022-06-30T12:58:07Z<p>Created page with "GO uses external ontologies for the logical definitions of some terms. =ChEBI= Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. ChEBI is used to describe compounds in GO, as well as in RHEA. Compounds used in GO are the forms present at pH 7, the physiological pH under most conditions in most organisms annotated with GO. The pH is not 7.3 in all organelles, organs and orga..."</p>
<p><b>New page</b></p><div>GO uses external ontologies for the logical definitions of some terms. <br />
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=ChEBI=<br />
Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. ChEBI is used to describe compounds in GO, as well as in RHEA. Compounds used in GO are the forms present at pH 7, the physiological pH under most conditions in most organisms annotated with GO. The pH is not 7.3 in all organelles, organs and organisms, but this was chosen as the most common form of the compounds. <br />
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To find which form of a chemical is present at pH7.3, go to [https://www.rhea-db.org/ www.rhea-db.org] and search for the CHEBI ID of the compound you have or for the compound name. Choose one of the reactions and scroll down to "reaction participants"; follow the link to ChEBI to get the compound name and ID. <br />
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Missing chemicals should be added to the GO imports file. <br />
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=Uberon=<br />
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=Cell Type Ontology=<br />
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== Review Status ==<br />
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Last reviewed: <br />
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[[Ontology_Development#Editing_the_Ontology |Back to: Editing the Ontology]]<br />
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[[Category:GO Editors]][[Category:Ontology]][[Category:Editor_Guide_2018]][[Category:To be reviewed]]</div>Pascale