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| =File description= | | =File description= |
| The <code>go-annotation-changes_no_pb</code> file contains the following information:
| | See documentation for [[File_Description:_go-annotation-changes|go-annotation-changes]] file. |
| | |
| ==summary==
| |
| ===current===
| |
| * '''release_date:''' Obtained from <code>release/metadata/release-date.json</code> or <code>snapshot/metadata/release-date.json</code>.
| |
| * '''annotations
| |
| ** '''total''': Total number of annotations.
| |
| ** '''[[GO_stats-glossary#aspect |by_aspect]]''': P, F, C.
| |
| ** '''[[GO_stats-glossary#evidence_cluster|by_evidence_cluster]]''': PHYLO, IEA, OTHER, EXP, ND
, HTP.
| |
| * '''[[GO_stats-glossary#bioentity_type |bioentities]]:''' Number of bioentities annotated in the GO database.
| |
| * '''taxa:''' Number of species with annotations.
| |
| * '''taxa_filtered:''' Number of species with at least 1,000 annotations.
| |
| * '''references:''' Number of distinct annotated references (includes PMIDs, GO_REFs, DOIs, internal IDs for Model Organism Databases and Reactome (note that for papers with both a PMID and an internal reference ID, the paper is counted twice).
| |
| * '''pmids:''' Number of annotated PMIDs.
| |
| | |
| ===previous===
| |
| * Same information as for the [[File_Description:_go-annotation-changes#current | current release]].
| |
| * Note that the date of the previous release is the most recent release in <code>release.geneontology.org/</code>, using the file <code>release.geneontology.org/YYYY-MM-DD/metadata/release-date.json</code>.
| |
| | |
| ===changes===
| |
| Differences between the current and the previous release for all the fields above. In addition, for taxa, references and pmids, the number of added and removed items are counted.
| |
| ====annotations====
| |
| * '''total''': Change in the total number of annotations.
| |
| * '''[[GO_stats-glossary#aspect |by_aspect]]:''' Changes in the total number of annotations for each aspect: P, F, C.
| |
| * '''[[GO_stats-glossary#evidence_cluster|by_evidence_cluster]]''': Changes in the total number of annotations for each [[GO_stats-glossary#evidence_cluster| evidence cluster]] (PHYLO, IEA, OTHER, EXP, ND
, HTP.).
| |
| | |
| ====[[GO_stats-glossary#bioentity_type |bioentities]]====
| |
| Change in the number of annotated [[GO_stats-glossary#bioentity_type |bioentities]].
| |
| | |
| ====taxa====
| |
| * '''total:''' Changes in the total number of annotated species.
| |
| * '''[[GO_stats-glossary#filtered_taxa |filtered]]:''' Changes in the number of annotated species by [[GO_stats-glossary#filtered_taxa |filtered taxa]].
| |
| * '''added:''' Number of new species annotated.
| |
| * '''removed:''' Number of removed species having lost all annotations.
| |
| | |
| ====references====
| |
| * '''total''': Change in the number of annotated references .
| |
| * '''added ''': Number of newly annotated references (data not yet available).
| |
| * '''removed''': Number of references having lost all annotations (data not yet available).
| |
| | |
| ====pmids====
| |
| * '''total''': Change in the number of annotated PMIDs.
| |
| * '''added ''': Number of newly annotated PMIDs (data not yet available).
| |
| * '''removed''': Number of PMIDs having lost all annotations (data not yet available).
| |
| | |
| ==detailed_changes==
| |
| All data in this section is shown as x/y, where x is the difference in the total number of annotations, y is the total number of annotations in the current release, and the % change in shown in parentheses.
| |
| | |
| ===annotations===
| |
| *'''total: '''Change in the total number of annotations.
| |
| * '''[[GO_stats-glossary#aspect |by_aspect]]:''' Change in the total number of annotation for each [[GO_stats-glossary#aspect |aspect]]: P, F, C.
| |
| * '''[[GO_stats-glossary#bioentity_type| by_bioentity_type]]'''
| |
| **'''[[GO_stats-glossary#bioentity_type| all]] :''' Change in the number of annotations for each [[GO_stats-glossary#bioentity_type| bioentity type]].
| |
| **'''[[GO_stats-glossary#bioentity_type_cluster| cluster]]:''' Change in the number of annotations by [[GO_stats-glossary#bioentity_type_cluster| bioentity type cluster]].
| |
| *'''by_taxon''': Change in the number of annotations by species.
| |
| *'''by_evidence'''
| |
| **'''[http://geneontology.org/docs/guide-go-evidence-codes all]'''
| |
| **'''[[GO_stats-glossary#evidence_cluster|by_evidence_cluster]]'''
| |
| *'''[[GO_stats-glossary#model_organism |by_model_organism]]'''
| |
| **'''[http://geneontology.org/docs/guide-go-evidence-codes by_evidence]:''' For each species, the number of annotations are shown for each individual evidence code, detailed by [[GO_stats-glossary#aspect |aspect]].
| |
| **'''[[GO_stats-glossary#evidence_cluster|by_evidence cluster]]:''' For each species, the number of annotations are shown for each [[GO_stats-glossary#evidence_cluster|evidence cluster]], detailed by [[GO_stats-glossary#aspect |aspect]].
| |
| *'''by_group:''' Changes in the total number of annotations for each contributing group, obtained using the 'assigned_by' field..
| |
| | |
| ===taxa===
| |
| *'''added: '''List of added species with current number of annotations.
| |
| *'''removed:''' List of removed species with previous number of annotations.
| |
| | |
| ===bioentities===
| |
| *'''total:''' The difference in the total number of annotated bioentities.
| |
| *'''by_type: '''
| |
| **'''[[GO_stats-glossary#bioentity_type| all]]:''' Difference in the number of annotated bioentities.
| |
| **'''[[GO_stats-glossary#bioentity_type_cluster|cluster]]:''' Difference in the number of annotated bioentities, grouped by [[GO_stats-glossary#bioentity_type_cluster |bioentity type clusters]].
| |
| *'''[[GO_stats-glossary#filtered_taxa |by_filtered_taxon]]:''' Difference in the number of annotated bioentities for each [[GO_stats-glossary#filtered_taxa|filtered species]], detailed by aspect (A, P, F, C).
| |
| **'''[[GO_stats-glossary#bioentity_type |all]]:''' Difference in the number of annotated bioentities for each species.
| |
| **'''[[GO_stats-glossary#bioentity_type_cluster|cluster]]:''' Difference in the number of annotated bioentities grouped by [[GO_stats-glossary#bioentity_type_cluster|bioentity clusters]], for each species.
| |
| | |
| ===references===
| |
| *'''all'''
| |
| **'''total''' Change in annotated references.
| |
| **'''[[GO_stats-glossary#filtered_taxa |by_filtered_taxon]]:''' Change in annotated references by species.
| |
| **'''by_group:''' Change in annotated references for each contributing group, obtained using the 'assigned_by' field..
| |
| *'''pmids'''
| |
| **'''total''' Change in annotated PMIDs.
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| **'''[[GO_stats-glossary#filtered_taxa |by_filtered_taxon]]:''' Change in annotated PMIDs by species.
| |
| **'''by_group:''' Change in annotated PMIDs for each contributing group, obtained using the 'assigned_by' field..
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| =Direct access to files= | | =Direct access to files= |
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| = Review Status = | | = Review Status = |
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| Last reviewed: October 24, 2019 | | Last reviewed: March 5, 2020 |
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| [[Category:Release Pipeline]] | | [[Category:Release Pipeline]] |