FlyBase December 2014: Difference between revisions

Revision as of 07:12, 25 November 2014

1. Staff working on GOC tasks

Susan Tweedie (GO curator) 0.8 FTE

Helen Attrill (GO curator/literature curator) 0.35 FTE

Peter McQuilton (Literature curator)

Steven Marygold (Literature curator)

Gillian Millburn (Literature curator)

Raymund Stefancsik (Literature curator)

Kathleen Falls (Developer)

Andy Schroeder (Developer)

Total number of staff working on GOC tasks approx 1.5 FTE; total funded by NIH GO grant 0.

2. Annotation progress

Table showing progress in annotating Drosophila localized genes Nov 2013 - Nov 2014 (FB2013_06 - FB2014_06)

	Nov 13	Nov 14	% change	% of total genes
Total number of localized genes (excluding pseudogenes)	16457	17382	+5.6%
Localized genes with no GO annotation	4655	4692	+0.8%	27.0%
Localized genes with any GO annotation	11802	12690	+7.5%	73.0%
Localized genes with 1 or more term based on experimental evidence	5786	6095	+18.8%	35.1%
Localized genes with other non-IEA, non-ND evidence	3733	3746	+0.4%	21.5%
Localized genes with only IEA evidence	1270	1074	-15.4%	6.2%
Localized genes with only ND evidence	1013	1775	+75.2%	10.2%

Table showing total annotation progress for localized genes Nov 2013 - Nov 2014 (FB2013_06 - FB2014_06)

	November 2013	November 2014	% change
GO Biological Process (BP) annotations (genes annotated for non-ROOT BP term)	42546 (9183 genes)	46245 (9471 genes)	+8.7% (+3.1%)
GO Molecular Function (MF) annotations (genes annotated for non-ROOT MF term)	26126 (8870 genes)	27872 (9037 genes)	+6.7% (+1.9%)
GO Cellular Component (CC) annotations (genes annotated for non-ROOT CC term)	20294 (7507 genes)	22911 (7959 genes)	+4.8% (+6.0%)
Total annotations for localized genes	88966	97028	+8.6%

@@ Line 48: / Line 48: @@
 |}
-Note there are 13827 predicted protein coding genes in Drosophila (FlyBase release FB2010_09 - November 19th 2010)
-GO annotation is available for an additional 340 genes that encode RNA products and 2085 genes that are not localised to the genome.
-==== Table showing annotation progress since the start of the Reference Genome project in August 2006 ====
+==== Table showing total annotation progress for localized genes Nov 2013 - Nov 2014 (FB2013_06 - FB2014_06)====
 {| border="1"
 |-
 !
-! August 2006
+! November 2013
-! October 2008
+! November 2014
-! November 2009
+! % change
-! November 2010
-! % change since Nov 2009
 |-
-| Experimental evidence || 11888 || 17322 || 20057 || 24115 || +20.2%
+| GO Biological Process (BP) annotations (genes annotated for non-ROOT BP term) || 42546 (9183 genes) || 46245 (9471 genes)  || +8.7% (+3.1%)
 |-
-| Computational evidence || 14946 || 15487 || 15493 || 15493 || 0%
+| GO Molecular Function (MF) annotations (genes annotated for non-ROOT MF term) || 26126 (8870 genes) || 27872 (9037 genes) ||  +6.7% (+1.9%)
 |-
-| Author/curator statements || 16711 || 16506 || 16379 || 16308 || -0.4%
+| GO Cellular Component (CC) annotations (genes annotated for non-ROOT CC term) || 20294 (7507 genes) || 22911 (7959 genes) ||  +4.8% (+6.0%)
 |-
-| Electronic annotation || 22626 || 16010 || 14923 || 15641 || +4.8%
+| Total annotations for localized genes || 88966 || 97028  || +8.6%
-|-
-| No biological data available || 4997 || 5022 || 4992 || 5422 || +8.6%
-|-
-| Total annotations || 71168 || 70351 || 71844 || 76979 || +7.1%
 |-
 |}