GAF file 2.0 survey (Retired)
- GAF file header: (please fill in)
- Column 2 should represent the 'canonical gene', and should map to column 1 of the Gene2geneproduct_file
- Column 12 now refers to the information in column 17 (or in Column 2 if Column 17 is empty).
- Column 16: can be left blank
- column 17: should represent the unit annotated (if different from that in column 2)
Can all groups provide the new file? (Yes or No, if not please explain):
| Reference Genome Group | Contact Person | ||||
|---|---|---|---|---|---|
| Y/N | Reason | SGD | Stacia Engel | ||
| MGI | Li Ni | ||||
| FlyBase | Susan Tweedie | ||||
| dictyBase | Pascale Gaudet | ||||
| E.coli | Jim Hu | ||||
| TAIR | Tanya Beradini | ||||
| WormBase | Kimberly Van Auken | ||||
| S. pombe | Val Wood | ||||
| RGD | Victoria Petri | ||||
| Human | Emily Dimmer | ||||
| Zebrafish | Doug Howe | No | ZFIN does not currently support curation of column 16 or 17 data during GO annotation. We are not likely to support curation of this type of data into ZFIN any time soon as it will require DB, curation interface, and public display changes that we are not likely to have time to implement any time soon....though I wish we could. I may still try to drum up some example data, but will have to manually manufacture a GAF with col. 16/17 data added on. | ||
| Chicken | Fiona McCarthy |