GO-CAM Noctua Call 2018-05-23

Meeting URL

Discuss Development Priorities post-Noctua 1.0 Release

Annotation

• Editing ('conventional' and GO-CAM)
• Model cloning

Error checks

• Incorporating annotation rules into Noctua

Evidence codes

• Working with ECO to create manual/automatic assertion children

GPAD Outputs

• Protein complexes
• Annotation extension relations white list

Landing Page

• Model searching

Model Seeding

• From GAFs
• From Reactome

Relations

• Reconcile CC annotation relations with CC ontology relations
• Use of has_input vs has_participant for binding annotations

Text Mining

• TPC integration into form

Derived GPAD Output

• Causal relations in GPAD output
• Annotation extensions to include
• Results of syntax check from Tony S. at UniProt
  • Qualifier list
  • Annotation extensions white list
  • Obsolete GO IDs
  • IPI annotations: With/From vs has_input AE
  • Evidence codes that don't map to three-letter GO codes
  • Do not annotate or Do not manually annotate subsets

Annotation SOPs

• https://github.com/geneontology/noctua/issues/552

Annotation Templates

• We need to give curators templates of common biological processes so we can get consistent annotation
• Examples:
  • Transcription
• Do we need a separate working group for this?

Minutes

• On call: Barbara, Dustin, Edith, Harold, Jim, Karen, Kimberly, Pascale, Rob, Seth, Stacia, Tremayne, Ben