GO-CAM Noctua Call 2018-05-23: Difference between revisions

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*Reconcile CC annotation relations with CC ontology relations
*Reconcile CC annotation relations with CC ontology relations
*Use of has_input vs has_participant for binding annotations
*Use of has_input vs has_participant for binding annotations
=== Templates ===
*Create and use templates for conserved BPs
=== Text Mining ===
=== Text Mining ===
*TPC integration into form
*TPC integration into form


== Derived GPAD Output ==
= GO-CAM Modeling Working Group =
*[https://github.com/geneontology/minerva/issues/109 Causal relations in GPAD output]
*Engage at least one curator from each annotation group in GOC
*Annotation extensions to include
*Discuss specific modeling issues
*Results of syntax check from Tony S. at UniProt
*Add to GO-CAM curation documentation
**Qualifier list
**Annotation extensions white list
**Obsolete GO IDs
**IPI annotations: With/From vs has_input AE
**Evidence codes that don't map to three-letter GO codes
**Do not annotate or Do not manually annotate subsets
 
== Annotation SOPs ==
*https://github.com/geneontology/noctua/issues/552
 
== Annotation Templates ==
*We need to give curators templates of common biological processes so we can get consistent annotation
*Examples:
**Transcription
*Do we need a separate working group for this?


= Minutes =
= Minutes =
*On call: Barbara, Dustin, Edith, Harold, Jim, Karen, Kimberly, Pascale, Rob, Seth, Stacia, Tremayne, Ben
*On call:  
 
[[Category: Annotation Working Group]]
[[Category: Annotation Working Group]]

Revision as of 15:51, 22 May 2018

Meeting URL

Discuss Development Priorities post-Noctua 1.0 Release

Annotation

  • Editing ('conventional' and GO-CAM)
  • Model cloning

Error checks

  • Incorporating annotation rules into Noctua

Evidence codes

  • Working with ECO to create manual/automatic assertion children

GPAD Outputs

  • Protein complexes
  • Annotation extension relations white list

Landing Page

  • Model searching

Model Seeding

  • From GAFs
  • From Reactome

Relations

  • Reconcile CC annotation relations with CC ontology relations
  • Use of has_input vs has_participant for binding annotations

Templates

  • Create and use templates for conserved BPs

Text Mining

  • TPC integration into form

GO-CAM Modeling Working Group

  • Engage at least one curator from each annotation group in GOC
  • Discuss specific modeling issues
  • Add to GO-CAM curation documentation

Minutes

  • On call:
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