GO-CAM Working Group Call 2018-06-26: Difference between revisions

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=Minutes=
=Minutes=
*On call: Dustin, Giulia, Jim, Kimberly, Laurent-Philippe, Penelope, Rob, Sabrina, Sandy L, Stacia, Suzi A, Suzi L
*On call:  


== Noctua ==
== Noctua ==
*Current landing page provides links to form and graph editors
*Landing page under development provides additional model search functionality, links to curator reports, information about GO terms in models
**Could be used to help identify related curation and experts who can review models on specific areas of biology
*Sabrina asked about what happens to group affiliation on older models if a curator is no longer with that group?
**Check with Seth, but the group affiliation at the time of model curation will likely remain unless the curator specifically requests that it be changed - use the noctua-models tracker to do this
**Removing an affiliation from a users.yaml entry should not affect affiliations in existing models
== QA/QC ==
*Noctua does not yet have taxon restrictions for annotation
**Will be added in the future
*gp2term relations for legacy annotations
**High priority for this summer is to address existing BP annotations and develop as many rules-based approaches for applying new relations as possible
**Whatever annotations are left will need to be manually reviewed by curators


== Curation Projects for this Group ==
== Curation Projects for this Group ==

Revision as of 15:58, 25 June 2018

Meeting URL

https://stanford.zoom.us/j/976175422

Agenda

Logistics

Noctua

Documentation

Proposal for this group

  • Focus on specific, commonly used curation modules
    • For example, transcription, signaling pathways, metabolic pathways
  • Groups will annotate papers of their own choosing
  • We will discuss representation of the data in GO-CAMs, and any questions or issues that arise
    • Choosing the appropriate relation
    • Assigning evidence
  • Give feedback to tool developers, ontology editors based on our discussions
  • Develop additional documentation

Minutes

  • On call:

Noctua

Curation Projects for this Group

  • Will try creating models for papers that describe transcriptional regulation
  • A caveat to this is that right now the MF branch for transcription factors is still under review, so we may have to make some changes to annotations in the future
    • However, it would still be good to work out the relations between the MFs and the BPs wrt transcription and upstream and downstream activities and processes
  • Google doc for entering papers and curation questions