GO-CAM Working Group Call 2018-06-26: Difference between revisions
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**However, it would still be good to work out the relations between the MFs and the BPs wrt transcription and upstream and downstream activities and processes | **However, it would still be good to work out the relations between the MFs and the BPs wrt transcription and upstream and downstream activities and processes | ||
*[https://docs.google.com/document/d/1icc1pb3mRFb4kK_ELVY1rjqxEjXNehrQzelWTqM-ZD4/edit# Google doc for entering papers and curation questions] | *[https://docs.google.com/document/d/1icc1pb3mRFb4kK_ELVY1rjqxEjXNehrQzelWTqM-ZD4/edit# Google doc for entering papers and curation questions] | ||
**Sabrina - PMID:28687631 'Clock1a affects mesoderm development and primitive hematopoiesis by regulating Nodal-Smad3 signaling in the zebrafish embryo.' | |||
**Kimberly - PMID: 28578929 'Morphological Diversity of C. elegans Sensory Cilia Instructed by the Differential Expression of an Immunoglobulin Domain Protein.' | |||
=Minutes= | =Minutes= |
Revision as of 19:20, 25 June 2018
Meeting URL
https://stanford.zoom.us/j/976175422
Agenda
Logistics
- User accounts
- Follow-up from last week: Sandy L
- https://github.com/geneontology/noctua/issues/563
- Closed - all okay
- Groups
- https://github.com/geneontology/noctua-models/issues/96
- Should this be discussed on Wednesday's technical call?
- https://github.com/geneontology/noctua-models/issues/96
Noctua
- Landing Page (under development)
- Browsing GO-CAMs
- User and Group Pages
- Curators should look around the landing page, provide feedback
Documentation
Proposal for this group
- Focus on specific, commonly used curation modules
- For example, transcription, signaling pathways, metabolic pathways
- Groups will annotate papers of their own choosing
- We will discuss representation of the data in GO-CAMs, and any questions or issues that arise
- Choosing the appropriate relation
- Assigning evidence
- Give feedback to tool developers, ontology editors based on our discussions
- Github trackers
- Develop additional documentation
Curation Project(s) for this Group
- Will try creating models for papers that describe transcriptional regulation
- A caveat to this is that right now the MF branch for transcription factors is still under review, so we may have to make some changes to annotations in the future
- However, it would still be good to work out the relations between the MFs and the BPs wrt transcription and upstream and downstream activities and processes
- Google doc for entering papers and curation questions
- Sabrina - PMID:28687631 'Clock1a affects mesoderm development and primitive hematopoiesis by regulating Nodal-Smad3 signaling in the zebrafish embryo.'
- Kimberly - PMID: 28578929 'Morphological Diversity of C. elegans Sensory Cilia Instructed by the Differential Expression of an Immunoglobulin Domain Protein.'
Minutes
- On call: