GO Galaxy Workshop at Biocuration 2013: Difference between revisions

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A workshop on the new [http://galaxy.berkeleybop.org/ GO Galaxy server] will be offered during [http://www.ebi.ac.uk/biocuration2013/home Biocuration 2013], being held 7-10 April 2013, in Cambridge UK
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[[Image:galaxy-logo.png]] &nbsp;&nbsp; [[Image:go-logo-large.jpg|150px|link=http://geneontology.org]] &nbsp;&nbsp; [[Image:isb-logo.jpg|link=http://www.ebi.ac.uk/biocuration2013/home]]
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= The GO Galaxy =
A [http://www.ebi.ac.uk/biocuration2013/content/workshop-descriptions workshop] on the new [http://galaxy.berkeleybop.org/ GO Galaxy server] will be offered Monday, 8 April, during [http://www.ebi.ac.uk/biocuration2013/home Biocuration 2013], being held 7-10 April 2013, in Cambridge UK
 
 


[http://galaxyproject.org/ Galaxy] is a data integration and analysis platform for the life sciences.  [http://galaxy.berkeleybop.org/ GO Galaxy (http://galaxy.berkeleybop.org/)] is free, Galaxy-based, public web server that provides a simple integrated environment in which ontological analysis tools can be linked into workflows.  
[http://galaxyproject.org/ Galaxy] is a data integration and analysis platform for the life sciences.  [http://galaxy.berkeleybop.org/ GO Galaxy (http://galaxy.berkeleybop.org/)] is free, Galaxy-based, public web server that provides a simple integrated environment in which ontological analysis tools can be linked into workflows.  


The GO website lists more than 50 tools for doing GO-based analyses but these are not well integrated. AmiGO/GOOSE offers some functionality such as slimming, enrichment, data extraction but these are difficult to chain together. The GO Galaxy server addresses these needs.
The [http://neurolex.org/wiki/Category:Resource:Gene_Ontology_Tools GO Tools] page lists more than 50 tools for doing GO-based analyses but these are not well integrated. AmiGO/GOOSE offers some functionality such as slimming, enrichment, data extraction but these are difficult to chain together. The GO Galaxy server addresses these needs.


This workshop will introduce Galaxy and then demonstrate how to use Galaxy to do
This workshop will introduce Galaxy and then demonstrate how to use Galaxy to do
# basic genomic analysis, and
# Basic genomic analysis, and
# Enrichment analysis using the GO Galaxy Server.
# Enrichment analysis using the GO Galaxy Server.


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==Instructors ==
==Instructors ==


* Suzanna Lewis, Berkeley Bioinformatics Open-source Projects, Lawrence Berkeley National Laboratory
* [http://www.berkeleybop.org/person/suzanna-lewis Suzanna Lewis], [http://www.berkeleybop.org/ Berkeley Bioinformatics Open-source Projects], [http://www.lbl.gov/ Lawrence Berkeley National Laboratory]
* [http://wiki.galaxyproject.org/DaveClements Dave Clements], [http://galaxyproject.org/ Galaxy Project], [http:/emory.edu Emory University]
* [http://wiki.galaxyproject.org/DaveClements Dave Clements], [http://galaxyproject.org/ Galaxy Project], [http://emory.edu/ Emory University]


== Registration ==
== Registration ==
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There is not a separate registration for the workshop.  However, you need to be [http://www.ebi.ac.uk/biocuration2013/content/registration registered for Biocuration] to attend the workshop.
There is not a separate registration for the workshop.  However, you need to be [http://www.ebi.ac.uk/biocuration2013/content/registration registered for Biocuration] to attend the workshop.


== 2013 GO Meeting ==
== Related Meetings ==
 
These meetings will also be held in Cambridge:


A [[2013 Cambridge GOC Meeting Agenda|GO Consortium meeting]] will also be held in Cambridge, immediately after Biocuration.
* A [http://www.gmod.org/wiki/April_2013_GMOD_Meeting GMOD Meeting] immediately before Biocuration.
* A [[2013 Cambridge GOC Meeting Agenda|GO Consortium meeting]] immediately after Biocuration.




[[Category:Workshops]]
[[Category:Workshops]] [[Category:Galaxy]]

Latest revision as of 21:10, 24 February 2013

     


A workshop on the new GO Galaxy server will be offered Monday, 8 April, during Biocuration 2013, being held 7-10 April 2013, in Cambridge UK


Galaxy is a data integration and analysis platform for the life sciences. GO Galaxy (http://galaxy.berkeleybop.org/) is free, Galaxy-based, public web server that provides a simple integrated environment in which ontological analysis tools can be linked into workflows.

The GO Tools page lists more than 50 tools for doing GO-based analyses but these are not well integrated. AmiGO/GOOSE offers some functionality such as slimming, enrichment, data extraction but these are difficult to chain together. The GO Galaxy server addresses these needs.

This workshop will introduce Galaxy and then demonstrate how to use Galaxy to do

  1. Basic genomic analysis, and
  2. Enrichment analysis using the GO Galaxy Server.

The motivating GO Galaxy application is enrichment analysis: Given a set of genes what biological process(es) is this set enriched for? A proposed standard for representing the results of term enrichment analyses is proposed so that the results from alternative tools can be directly compared.

Participants will gain specific knowledge about how to use Galaxy to perform these types of analysis, and repeat, reuse, share, and publish their analysis. This workshop is geared towards biologists. No programming or command line knowledge is assumed or required. A basic knowledge of ontology principles will be helpful.

Instructors

Registration

There is not a separate registration for the workshop. However, you need to be registered for Biocuration to attend the workshop.

Related Meetings

These meetings will also be held in Cambridge: