GO stats-glossary: Difference between revisions
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=aspect= | =aspect= | ||
==A== | ==A== | ||
==P== | all (biological_process + molecular_function + cellular_component) | ||
==F== | ==P== | ||
==C== | biological_process | ||
==F== | |||
molecular_function | |||
==C== | |||
cellular_component | |||
=bioentitiy type= | =bioentitiy type= | ||
Revision as of 05:48, 18 October 2019
aspect
A
all (biological_process + molecular_function + cellular_component)
P
biological_process
F
molecular_function
C
cellular_component
bioentitiy type
In the October 2019 release, the bioentity types used are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- tRNA
- miRNA
- antisense_lncRNA
- snoRNA
- rRNA
- RNA
- ncRNA
- snRNA
- scRNA
- lnc_RNA
- lincRNA
- pseudogene
- RNase_MRP_RNA
- antisense_RNA
- RNase_P_RNA
- telomerase_RNA
- tmRNA
RNA_cluster
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
evidence_cluster
==PHYLO==: IBA, IKR, IRD and IMR (retired) ==IEA==: IEA ==OTHER==: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS ==EXP==: EXP, IDA, IEP, IGC, IGI, IMP, IPI ==ND==: ND ==HTP==: HDA, HEP, HGI, HMP, HTP
filtered taxa
Taxa with > 1,000 annotations (including IEAs)
model_organism
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: NCBITaxon:9606, Homo sapiens NCBITaxon:10116|Rattus norvegicus NCBITaxon:10090|Mus musculus NCBITaxon:3702|Arabidopsis thaliana NCBITaxon:7955|Danio rerio NCBITaxon:6239|Caenorhabditis elegans NCBITaxon:559292|Saccharomyces cerevisiae S288C NCBITaxon:7227|Drosophila melanogaster NCBITaxon:44689|Dictyostelium discoideum NCBITaxon:4896|Schizosaccharomyces pombe NCBITaxon:83333|Escherichia coli K-12
Review Status
Last reviewed: October 18, 2019