GO stats-glossary: Difference between revisions

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=evidence_cluster=
=evidence_cluster=
==PHYLO==: IBA, IKR, IRD and IMR (retired)
==PHYLO==
==IEA==: IEA
IBA, IKR, IRD and IMR (retired)
==OTHER==: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

==IEA==
==EXP==: EXP, IDA, IEP, IGC, IGI, IMP, IPI

IEA
==ND==: ND

==OTHER==
==HTP==: HDA, HEP, HGI, HMP, HTP
IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

==EXP==
EXP, IDA, IEP, IGC, IGI, IMP, IPI

==ND==
ND

==HTP==
HDA, HEP, HGI, HMP, HTP


=filtered taxa=
=filtered taxa=

Revision as of 05:48, 18 October 2019

aspect

A

all (biological_process + molecular_function + cellular_component)

P

biological_process

F

molecular_function

C

cellular_component

bioentitiy type

In the October 2019 release, the bioentity types used are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • tRNA
  • miRNA
  • antisense_lncRNA
  • snoRNA
  • rRNA
  • RNA
  • ncRNA
  • snRNA
  • scRNA
  • lnc_RNA
  • lincRNA
  • pseudogene
  • RNase_MRP_RNA
  • antisense_RNA
  • RNase_P_RNA
  • telomerase_RNA
  • tmRNA

RNA_cluster

Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA


evidence_cluster

PHYLO

IBA, IKR, IRD and IMR (retired)

IEA

IEA

OTHER

IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS


EXP

EXP, IDA, IEP, IGC, IGI, IMP, IPI


ND

ND


HTP

HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: NCBITaxon:9606, Homo sapiens NCBITaxon:10116|Rattus norvegicus NCBITaxon:10090|Mus musculus NCBITaxon:3702|Arabidopsis thaliana NCBITaxon:7955|Danio rerio NCBITaxon:6239|Caenorhabditis elegans NCBITaxon:559292|Saccharomyces cerevisiae S288C NCBITaxon:7227|Drosophila melanogaster NCBITaxon:44689|Dictyostelium discoideum NCBITaxon:4896|Schizosaccharomyces pombe NCBITaxon:83333|Escherichia coli K-12


Review Status

Last reviewed: October 18, 2019