GO stats-glossary: Difference between revisions
mNo edit summary |
|||
Line 41: | Line 41: | ||
=evidence_cluster= | =evidence_cluster= | ||
==PHYLO== | ==PHYLO== | ||
==IEA== | IBA, IKR, IRD and IMR (retired) | ||
==OTHER== | ==IEA== | ||
==EXP== | IEA | ||
==ND== | ==OTHER== | ||
==HTP== | IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
| ||
==EXP== | |||
EXP, IDA, IEP, IGC, IGI, IMP, IPI
| |||
==ND== | |||
ND
| |||
==HTP== | |||
HDA, HEP, HGI, HMP, HTP | |||
=filtered taxa= | =filtered taxa= |
Revision as of 05:48, 18 October 2019
aspect
A
all (biological_process + molecular_function + cellular_component)
P
biological_process
F
molecular_function
C
cellular_component
bioentitiy type
In the October 2019 release, the bioentity types used are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- tRNA
- miRNA
- antisense_lncRNA
- snoRNA
- rRNA
- RNA
- ncRNA
- snRNA
- scRNA
- lnc_RNA
- lincRNA
- pseudogene
- RNase_MRP_RNA
- antisense_RNA
- RNase_P_RNA
- telomerase_RNA
- tmRNA
RNA_cluster
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
evidence_cluster
PHYLO
IBA, IKR, IRD and IMR (retired)
IEA
IEA
OTHER
IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
EXP
EXP, IDA, IEP, IGC, IGI, IMP, IPI
ND
ND
HTP
HDA, HEP, HGI, HMP, HTP
filtered taxa
Taxa with > 1,000 annotations (including IEAs)
model_organism
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: NCBITaxon:9606, Homo sapiens NCBITaxon:10116|Rattus norvegicus NCBITaxon:10090|Mus musculus NCBITaxon:3702|Arabidopsis thaliana NCBITaxon:7955|Danio rerio NCBITaxon:6239|Caenorhabditis elegans NCBITaxon:559292|Saccharomyces cerevisiae S288C NCBITaxon:7227|Drosophila melanogaster NCBITaxon:44689|Dictyostelium discoideum NCBITaxon:4896|Schizosaccharomyces pombe NCBITaxon:83333|Escherichia coli K-12
Review Status
Last reviewed: October 18, 2019