GO stats-glossary: Difference between revisions

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=model_organism =
=model_organism =
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
NCBITaxon:9606, Homo sapiens
*NCBITaxon:9606, Homo sapiens
NCBITaxon:10116|Rattus norvegicus
*NCBITaxon:10116|Rattus norvegicus
NCBITaxon:10090|Mus musculus
*NCBITaxon:10090|Mus musculus
NCBITaxon:3702|Arabidopsis thaliana
*NCBITaxon:3702|Arabidopsis thaliana
NCBITaxon:7955|Danio rerio
*NCBITaxon:7955|Danio rerio
NCBITaxon:6239|Caenorhabditis elegans
*NCBITaxon:6239|Caenorhabditis elegans
NCBITaxon:559292|Saccharomyces cerevisiae S288C
*NCBITaxon:559292|Saccharomyces cerevisiae S288C
NCBITaxon:7227|Drosophila melanogaster
*NCBITaxon:7227|Drosophila melanogaster
NCBITaxon:44689|Dictyostelium discoideum
*NCBITaxon:44689|Dictyostelium discoideum
NCBITaxon:4896|Schizosaccharomyces pombe
*NCBITaxon:4896|Schizosaccharomyces pombe
NCBITaxon:83333|Escherichia coli K-12
*NCBITaxon:83333|Escherichia coli K-12


= Review Status =
= Review Status =

Revision as of 05:49, 18 October 2019

aspect

A

all (biological_process + molecular_function + cellular_component)

P

biological_process

F

molecular_function

C

cellular_component

bioentitiy type

In the October 2019 release, the bioentity types used are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • tRNA
  • miRNA
  • antisense_lncRNA
  • snoRNA
  • rRNA
  • RNA
  • ncRNA
  • snRNA
  • scRNA
  • lnc_RNA
  • lincRNA
  • pseudogene
  • RNase_MRP_RNA
  • antisense_RNA
  • RNase_P_RNA
  • telomerase_RNA
  • tmRNA

RNA_cluster

Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA


evidence_cluster

PHYLO

IBA, IKR, IRD and IMR (retired)

IEA

IEA

OTHER

IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS


EXP

EXP, IDA, IEP, IGC, IGI, IMP, IPI


ND

ND


HTP

HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:

  • NCBITaxon:9606, Homo sapiens
  • NCBITaxon:10116|Rattus norvegicus
  • NCBITaxon:10090|Mus musculus
  • NCBITaxon:3702|Arabidopsis thaliana
  • NCBITaxon:7955|Danio rerio
  • NCBITaxon:6239|Caenorhabditis elegans
  • NCBITaxon:559292|Saccharomyces cerevisiae S288C
  • NCBITaxon:7227|Drosophila melanogaster
  • NCBITaxon:44689|Dictyostelium discoideum
  • NCBITaxon:4896|Schizosaccharomyces pombe
  • NCBITaxon:83333|Escherichia coli K-12

Review Status

Last reviewed: October 18, 2019