GO stats-glossary: Difference between revisions
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=model_organism = | =model_organism = | ||
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: | Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: | ||
NCBITaxon:9606, Homo sapiens | *NCBITaxon:9606, Homo sapiens | ||
NCBITaxon:10116|Rattus norvegicus | *NCBITaxon:10116|Rattus norvegicus | ||
NCBITaxon:10090|Mus musculus | *NCBITaxon:10090|Mus musculus | ||
NCBITaxon:3702|Arabidopsis thaliana | *NCBITaxon:3702|Arabidopsis thaliana | ||
NCBITaxon:7955|Danio rerio | *NCBITaxon:7955|Danio rerio | ||
NCBITaxon:6239|Caenorhabditis elegans | *NCBITaxon:6239|Caenorhabditis elegans | ||
NCBITaxon:559292|Saccharomyces cerevisiae S288C | *NCBITaxon:559292|Saccharomyces cerevisiae S288C | ||
NCBITaxon:7227|Drosophila melanogaster | *NCBITaxon:7227|Drosophila melanogaster | ||
NCBITaxon:44689|Dictyostelium discoideum | *NCBITaxon:44689|Dictyostelium discoideum | ||
NCBITaxon:4896|Schizosaccharomyces pombe | *NCBITaxon:4896|Schizosaccharomyces pombe | ||
NCBITaxon:83333|Escherichia coli K-12 | *NCBITaxon:83333|Escherichia coli K-12 | ||
= Review Status = | = Review Status = |
Revision as of 05:49, 18 October 2019
aspect
A
all (biological_process + molecular_function + cellular_component)
P
biological_process
F
molecular_function
C
cellular_component
bioentitiy type
In the October 2019 release, the bioentity types used are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- tRNA
- miRNA
- antisense_lncRNA
- snoRNA
- rRNA
- RNA
- ncRNA
- snRNA
- scRNA
- lnc_RNA
- lincRNA
- pseudogene
- RNase_MRP_RNA
- antisense_RNA
- RNase_P_RNA
- telomerase_RNA
- tmRNA
RNA_cluster
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
evidence_cluster
PHYLO
IBA, IKR, IRD and IMR (retired)
IEA
IEA
OTHER
IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
EXP
EXP, IDA, IEP, IGC, IGI, IMP, IPI
ND
ND
HTP
HDA, HEP, HGI, HMP, HTP
filtered taxa
Taxa with > 1,000 annotations (including IEAs)
model_organism
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
- NCBITaxon:9606, Homo sapiens
- NCBITaxon:10116|Rattus norvegicus
- NCBITaxon:10090|Mus musculus
- NCBITaxon:3702|Arabidopsis thaliana
- NCBITaxon:7955|Danio rerio
- NCBITaxon:6239|Caenorhabditis elegans
- NCBITaxon:559292|Saccharomyces cerevisiae S288C
- NCBITaxon:7227|Drosophila melanogaster
- NCBITaxon:44689|Dictyostelium discoideum
- NCBITaxon:4896|Schizosaccharomyces pombe
- NCBITaxon:83333|Escherichia coli K-12
Review Status
Last reviewed: October 18, 2019