GO stats-glossary: Difference between revisions

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=evidence_cluster=
=evidence_cluster=
==PHYLO==
Evidence grouped as follows:
===PHYLO===
IBA, IKR, IRD and IMR (retired)
IBA, IKR, IRD and IMR (retired)
==IEA==
===IEA===
IEA
IEA
==OTHER==
===OTHER===
IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

==EXP==
===EXP===
EXP, IDA, IEP, IGC, IGI, IMP, IPI

EXP, IDA, IEP, IGC, IGI, IMP, IPI

==ND==
===ND===
ND

ND

==HTP==
===HTP===
HDA, HEP, HGI, HMP, HTP
HDA, HEP, HGI, HMP, HTP



Revision as of 05:56, 18 October 2019

aspect

A

all (biological_process + molecular_function + cellular_component)

P

biological_process

F

molecular_function

C

cellular_component

bioentity type

In the October 2019 release, the bioentity types used are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • tRNA
  • miRNA
  • antisense_lncRNA
  • snoRNA
  • rRNA
  • RNA
  • ncRNA
  • snRNA
  • scRNA
  • lnc_RNA
  • lincRNA
  • pseudogene
  • RNase_MRP_RNA
  • antisense_RNA
  • RNase_P_RNA
  • telomerase_RNA
  • tmRNA

RNA_cluster

Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA


evidence_cluster

Evidence grouped as follows:

PHYLO

IBA, IKR, IRD and IMR (retired)

IEA

IEA

OTHER

IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS


EXP

EXP, IDA, IEP, IGC, IGI, IMP, IPI


ND

ND


HTP

HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:

  • NCBITaxon:9606, Homo sapiens
  • NCBITaxon:10116|Rattus norvegicus
  • NCBITaxon:10090|Mus musculus
  • NCBITaxon:3702|Arabidopsis thaliana
  • NCBITaxon:7955|Danio rerio
  • NCBITaxon:6239|Caenorhabditis elegans
  • NCBITaxon:559292|Saccharomyces cerevisiae S288C
  • NCBITaxon:7227|Drosophila melanogaster
  • NCBITaxon:44689|Dictyostelium discoideum
  • NCBITaxon:4896|Schizosaccharomyces pombe
  • NCBITaxon:83333|Escherichia coli K-12

Review Status

Last reviewed: October 18, 2019