GO stats-glossary: Difference between revisions
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*tmRNA | *tmRNA | ||
= | =bioentity type cluster= | ||
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA | The bioentity type clusters are: | ||
*protein | |||
*protein_complex | |||
*gene_product | |||
*gene | |||
*transcript | |||
*primary_transcript | |||
*RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA | |||
Revision as of 11:22, 18 October 2019
aspect
A
all (biological_process + molecular_function + cellular_component)
B
Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
P
biological_process
F
molecular_function
C
cellular_component
bioentity type
In the October 2019 release, the bioentity types used are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- tRNA
- miRNA
- antisense_lncRNA
- snoRNA
- rRNA
- RNA
- ncRNA
- snRNA
- scRNA
- lnc_RNA
- lincRNA
- pseudogene
- RNase_MRP_RNA
- antisense_RNA
- RNase_P_RNA
- telomerase_RNA
- tmRNA
bioentity type cluster
The bioentity type clusters are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
evidence_cluster
Evidence grouped as follows:
PHYLO
IBA, IKR, IRD and IMR (retired)
IEA
IEA
OTHER
IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
EXP
EXP, IDA, IEP, IGC, IGI, IMP, IPI
ND
ND
HTP
HDA, HEP, HGI, HMP, HTP
filtered taxa
Taxa with > 1,000 annotations (including IEAs)
model_organism
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
- NCBITaxon:9606, Homo sapiens
- NCBITaxon:10116|Rattus norvegicus
- NCBITaxon:10090|Mus musculus
- NCBITaxon:3702|Arabidopsis thaliana
- NCBITaxon:7955|Danio rerio
- NCBITaxon:6239|Caenorhabditis elegans
- NCBITaxon:559292|Saccharomyces cerevisiae S288C
- NCBITaxon:7227|Drosophila melanogaster
- NCBITaxon:44689|Dictyostelium discoideum
- NCBITaxon:4896|Schizosaccharomyces pombe
- NCBITaxon:83333|Escherichia coli K-12
Review Status
Last reviewed: October 18, 2019