GO stats-glossary: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
Line 39: Line 39:
*tmRNA
*tmRNA


=RNA_cluster=
=bioentity type cluster=
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
The bioentity type clusters are:
*protein
*protein_complex
*gene_product
*gene
*transcript
*primary_transcript
*RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA





Revision as of 11:22, 18 October 2019

aspect

A

all (biological_process + molecular_function + cellular_component)

B

Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.

P

biological_process

F

molecular_function

C

cellular_component

bioentity type

In the October 2019 release, the bioentity types used are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • tRNA
  • miRNA
  • antisense_lncRNA
  • snoRNA
  • rRNA
  • RNA
  • ncRNA
  • snRNA
  • scRNA
  • lnc_RNA
  • lincRNA
  • pseudogene
  • RNase_MRP_RNA
  • antisense_RNA
  • RNase_P_RNA
  • telomerase_RNA
  • tmRNA

bioentity type cluster

The bioentity type clusters are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA


evidence_cluster

Evidence grouped as follows:

PHYLO

IBA, IKR, IRD and IMR (retired)

IEA

IEA

OTHER

IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS


EXP

EXP, IDA, IEP, IGC, IGI, IMP, IPI


ND

ND


HTP

HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:

  • NCBITaxon:9606, Homo sapiens
  • NCBITaxon:10116|Rattus norvegicus
  • NCBITaxon:10090|Mus musculus
  • NCBITaxon:3702|Arabidopsis thaliana
  • NCBITaxon:7955|Danio rerio
  • NCBITaxon:6239|Caenorhabditis elegans
  • NCBITaxon:559292|Saccharomyces cerevisiae S288C
  • NCBITaxon:7227|Drosophila melanogaster
  • NCBITaxon:44689|Dictyostelium discoideum
  • NCBITaxon:4896|Schizosaccharomyces pombe
  • NCBITaxon:83333|Escherichia coli K-12

Review Status

Last reviewed: October 18, 2019