GO stats-glossary: Difference between revisions
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=aspect= | =aspect= | ||
* '''A:''' all aspects combined: biological_process + molecular_function + cellular_component | |||
all | * '''B:''' Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding. | ||
* '''P:''' biological_process | |||
Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding. | * '''F:''' molecular_function | ||
* '''C:''' cellular_component | |||
biological_process | |||
molecular_function | |||
cellular_component | |||
=bioentity type= | =bioentity type= | ||
Line 52: | Line 46: | ||
=evidence_cluster= | =evidence_cluster= | ||
Evidence grouped as follows: | Evidence grouped as follows: | ||
* '''PHYLO:''' IBA, IKR, IRD and IMR (retired) | |||
IBA, IKR, IRD and IMR (retired) | * '''IEA:'''IEA | ||
* '''OTHER:''' IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
| |||
IEA | * '''EXP:''' EXP, IDA, IEP, IGC, IGI, IMP, IPI
| ||
* '''ND:''' ND
| |||
IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
| * '''HTP:''' HDA, HEP, HGI, HMP, HTP | ||
EXP, IDA, IEP, IGC, IGI, IMP, IPI
| |||
ND
| |||
HDA, HEP, HGI, HMP, HTP | |||
=filtered taxa= | =filtered taxa= | ||
Taxa with > 1,000 annotations (including IEAs) | Taxa with > 1,000 annotations (including IEAs) | ||
=model_organism = | =model_organism = | ||
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: | Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: | ||
Line 83: | Line 72: | ||
= Review Status = | = Review Status = | ||
Last reviewed: October | Last reviewed: October 24, 2019 | ||
[[Category:Release Pipeline]] | [[Category:Release Pipeline]] |
Latest revision as of 16:25, 24 October 2019
aspect
- A: all aspects combined: biological_process + molecular_function + cellular_component
- B: Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
- P: biological_process
- F: molecular_function
- C: cellular_component
bioentity type
In the October 2019 release, the bioentity types used are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- tRNA
- miRNA
- antisense_lncRNA
- snoRNA
- rRNA
- RNA
- ncRNA
- snRNA
- scRNA
- lnc_RNA
- lincRNA
- pseudogene
- RNase_MRP_RNA
- antisense_RNA
- RNase_P_RNA
- telomerase_RNA
- tmRNA
bioentity type cluster
The bioentity type clusters are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
evidence_cluster
Evidence grouped as follows:
- PHYLO: IBA, IKR, IRD and IMR (retired)
- IEA:IEA
- OTHER: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
- EXP: EXP, IDA, IEP, IGC, IGI, IMP, IPI
- ND: ND
- HTP: HDA, HEP, HGI, HMP, HTP
filtered taxa
Taxa with > 1,000 annotations (including IEAs)
model_organism
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
- NCBITaxon:9606, Homo sapiens
- NCBITaxon:10116|Rattus norvegicus
- NCBITaxon:10090|Mus musculus
- NCBITaxon:3702|Arabidopsis thaliana
- NCBITaxon:7955|Danio rerio
- NCBITaxon:6239|Caenorhabditis elegans
- NCBITaxon:559292|Saccharomyces cerevisiae S288C
- NCBITaxon:7227|Drosophila melanogaster
- NCBITaxon:44689|Dictyostelium discoideum
- NCBITaxon:4896|Schizosaccharomyces pombe
- NCBITaxon:83333|Escherichia coli K-12
Review Status
Last reviewed: October 24, 2019