Geneva ontology editors meeting- Dec 10-13, 2018 - Logistics: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
 
(38 intermediate revisions by 8 users not shown)
Line 1: Line 1:
===Ontology Developers' workshop===
=Logistics=
The meeting will focus on (Depending on who can attend):
* creating good logical definitions in both a general context and in the context of the GO-Reactome-Rhea alignment
** Filling in missing GO-Rhea xrefs
** moving from reactions to biochemical pathways
** implementation of a method to keep in synch with all three resources
** GO-CAM templates for pathways??
* potential implementation of Design Patterns and the revival of some type of TermGenie ability
* GH ticket work and mini-project planning
** Dealing with and migrating binding terms
** Dealing with cellular processes (https://github.com/geneontology/go-ontology/issues/12849)
** Taxon constaints- How do we handle them going forward?
* Attendees
** David H (Can make it)
** Kimberly (Can make it)
** Karen
** Harold (Can make it)
** Pascale (Can make it)
** Barbara (Maybe make it)
** Alan B (Rhea, can make any day)
** Anne (Rhea, prefers Monday or Tuesday)
** Chris
** Peter D?
** Ben?
** Jim?
** Paul T


==Dates==
*December 10-13, 2018
** ARRIVAL: Dec 8th (Fly from US on Friday Dec 7th)
** DEPARTURE: Friday Dec 14th


==Other potential topics (in case we finish early)==
== Meeting Venue ==
* HEG (Haute Ecole de Gestion de Geneve), Carouge (Geneve)
* Campus de Battelle: https://goo.gl/maps/k93FWVUxdv42
* B building ('bâtiment'), Room B5.12
* Rue de la Tambourine 17
* 1227 Carouge
https://www.hesge.ch/heg/sites/default/files/documents/plan-acces-heg.pdf
The venue is just across the street from the hotel.


== Dinners==
* Saturday: 6:30 PM Cheval blanc Place de l'octroi - Tapas (http://www.lechevalblanc.ch/# )
* Sunday: 7 PM Café du Marché Place du Marché 4 - 1227 Carouge - 10 people
* Monday: Fondue Bain des Paquis 19h
* Tuesday: Auberge communale de Carouge (Vicolo39) 19h30 - 10 people
* Wednesday: Fete de l'escalade Chene-Bourg (free soup, food stands, parade, chocolate. We're celebrating chasing the Savoyads (now part of France) out of Geneva: https://en.wikipedia.org/wiki/L%27Escalade)
* Thursday: Bang Yai 19h30 - rue des Noirettes 7, Geneva 1227, Switzerland  -  10 people


* Define, wherever possible, the start and end of biological processes, e.g. signaling pathways + how that will be represented in GO-CAM models.
== Lunches==
* GH Jamboree
* Monday: cafeteria or pizzas
* Creating necessary and sufficient logical definitions (We never got around to this in Berkeley)
* Tuesday:
** Logical definitions for protein-containing complexes (protein-containing complex part_of some x and capable_of some y?)
* Wednesday: Marché de Carouge - food stands
* Detailed documentation on pipelines and file processing (important!)
* Thursday: Le Vieux Pressoir (http://levieuxpressoir.ch/) 12h30 12 people
* Dealing with GH conflicts (Pascale has added documentation to the wiki - is there more to do here?)


== Hotel ==
'''Ibis Style Carouge hotel''': https://www.accorhotels.com/gb/hotel-6863-ibis-styles-geneve-carouge/index.shtml
* Carouge Rondeau tram station (Trams 12 and 18)
* 3 Route De Saint Julien, 1227 CAROUGE, SWITZERLAND
* Tel: (+41)225448600
* Wifi and breakfast included
* Checkin /checkout: 12 noon


[[Category: Meetings]]
==Access by public transportation==
The hotel and the HEG (where the meeting will be held) are essentially across the street from each other.
* '''Tram''' lines 18 et 12 : "Carouge (Rondeau)" stop
** Tram 18 is also connected from the train station ("Gare Cornavin")
* '''Bus''' 44 or 45 : "Grange-Collomb" stop
 
==Free Public transportation==
* '''From Geneva Airport''' offers free public transport tickets valid for 80 minutes to new arrivals. This free ticket can be taken from a machine in the baggage claim area '''(just after the baggage carousels)'''. This ticket is only valid with your flight ticket to prove that you have arrived on that day.<br/>
* '''In the city''': All visitors staying at a hotel benefit from the [http://www.geneve-tourisme.ch/?rubrique=0000000417 Geneva Transport Card], with no additional cost. This personal and non-transferable pass is established upon the visitor’s check-in in the hotel, enabling its holder to use of the entire public transportation network without restriction (bus, train and boat), with validity for the entire duration of the stay including the departure day.
 
 
* Trip planning: Geneva public transport website: http://www.tpg.ch/
 
 
==Travel==
Contact Lourdes to arrange your travel. Give her your preferred flights. Must be on US carrier or code share.
 
= Agenda =
 
https://docs.google.com/document/d/1ixnmDZ75cFFdGN9H6CY5hyRkoPrCn6MvZVmERo_--Rw/edit
 
= Participants =
 
Ontology Group
 
* David Hill MGI
* Harold Drabkin MGI
* Kimberly Van Auken WormBase
* Paul Thomas USC
* Huaiyu Mi USC
* Pascale Gaudet SIB
 
Software Group
* Chris Mungall - Berkeley
* Ben Good- Berkeley
* Jim Balhoff - Berkeley (RENCI UNC)
 
External Curators
 
* Peter D'Eustachio Reactome
* Antonio Fabregat Mundo EBI Reactome
* Alan Bridges Rhea
* Anne Morgat Rhea
* Thierry Lombardot Rhea
* Nicole Redaschi
 
 
[[Category:Meetings]]

Latest revision as of 09:54, 10 December 2018

Logistics

Dates

  • December 10-13, 2018
    • ARRIVAL: Dec 8th (Fly from US on Friday Dec 7th)
    • DEPARTURE: Friday Dec 14th

Meeting Venue

  • HEG (Haute Ecole de Gestion de Geneve), Carouge (Geneve)
  • Campus de Battelle: https://goo.gl/maps/k93FWVUxdv42
  • B building ('bâtiment'), Room B5.12
  • Rue de la Tambourine 17
  • 1227 Carouge

https://www.hesge.ch/heg/sites/default/files/documents/plan-acces-heg.pdf The venue is just across the street from the hotel.

Dinners

  • Saturday: 6:30 PM Cheval blanc Place de l'octroi - Tapas (http://www.lechevalblanc.ch/# )
  • Sunday: 7 PM Café du Marché Place du Marché 4 - 1227 Carouge - 10 people
  • Monday: Fondue Bain des Paquis 19h
  • Tuesday: Auberge communale de Carouge (Vicolo39) 19h30 - 10 people
  • Wednesday: Fete de l'escalade Chene-Bourg (free soup, food stands, parade, chocolate. We're celebrating chasing the Savoyads (now part of France) out of Geneva: https://en.wikipedia.org/wiki/L%27Escalade)
  • Thursday: Bang Yai 19h30 - rue des Noirettes 7, Geneva 1227, Switzerland - 10 people

Lunches

  • Monday: cafeteria or pizzas
  • Tuesday:
  • Wednesday: Marché de Carouge - food stands
  • Thursday: Le Vieux Pressoir (http://levieuxpressoir.ch/) 12h30 12 people

Hotel

Ibis Style Carouge hotel: https://www.accorhotels.com/gb/hotel-6863-ibis-styles-geneve-carouge/index.shtml

  • Carouge Rondeau tram station (Trams 12 and 18)
  • 3 Route De Saint Julien, 1227 CAROUGE, SWITZERLAND
  • Tel: (+41)225448600
  • Wifi and breakfast included
  • Checkin /checkout: 12 noon

Access by public transportation

The hotel and the HEG (where the meeting will be held) are essentially across the street from each other.

  • Tram lines 18 et 12 : "Carouge (Rondeau)" stop
    • Tram 18 is also connected from the train station ("Gare Cornavin")
  • Bus 44 or 45 : "Grange-Collomb" stop

Free Public transportation

  • From Geneva Airport offers free public transport tickets valid for 80 minutes to new arrivals. This free ticket can be taken from a machine in the baggage claim area (just after the baggage carousels). This ticket is only valid with your flight ticket to prove that you have arrived on that day.
  • In the city: All visitors staying at a hotel benefit from the Geneva Transport Card, with no additional cost. This personal and non-transferable pass is established upon the visitor’s check-in in the hotel, enabling its holder to use of the entire public transportation network without restriction (bus, train and boat), with validity for the entire duration of the stay including the departure day.



Travel

Contact Lourdes to arrange your travel. Give her your preferred flights. Must be on US carrier or code share.

Agenda

https://docs.google.com/document/d/1ixnmDZ75cFFdGN9H6CY5hyRkoPrCn6MvZVmERo_--Rw/edit

Participants

Ontology Group

  • David Hill MGI
  • Harold Drabkin MGI
  • Kimberly Van Auken WormBase
  • Paul Thomas USC
  • Huaiyu Mi USC
  • Pascale Gaudet SIB

Software Group

  • Chris Mungall - Berkeley
  • Ben Good- Berkeley
  • Jim Balhoff - Berkeley (RENCI UNC)

External Curators

  • Peter D'Eustachio Reactome
  • Antonio Fabregat Mundo EBI Reactome
  • Alan Bridges Rhea
  • Anne Morgat Rhea
  • Thierry Lombardot Rhea
  • Nicole Redaschi