Is active in: Difference between revisions
Jump to navigation
Jump to search
| Line 8: | Line 8: | ||
*In gene annotation files, the 'is active in' relation is used for associations between a gene or gene product and a Cellular Component. | *In gene annotation files, the 'is active in' relation is used for associations between a gene or gene product and a Cellular Component. | ||
* | *https://www.ncbi.nlm.nih.gov/pubmed/8654923 The Caenorhabditis elegans cell-death protein CED-3 is a cysteine protease with substrate specificities similar to those of the human CPP32 protease.] | ||
**The paper | **The paper shows that ced-3 localizes to the cytosol | ||
* Examplar: http://noctua.berkeleybop.org/editor/graph/gomodel: | * Examplar: http://noctua.berkeleybop.org/editor/graph/gomodel:593423e000000013 | ||
** Inferred GPAD: http://noctua.berkeleybop.org/workbench/annpreview/?model_id=gomodel: | ** Inferred GPAD:http://noctua.berkeleybop.org/workbench/annpreview/?model_id=gomodel:593423e000000013 | ||
== Quality Control Checks == | == Quality Control Checks == | ||
Revision as of 14:13, 11 May 2018
Overview
The 'is active in' relation is used to relate a gene or gene product to the GO Cellular Component in which the gene or gene product enables its Molecular Function, e.g. ced-3 'is active in' cytosol. This indicates that the ced-3 gene product executes its molecular function in the cytosol.
Definition
Child Terms
Examples of Usage
- In gene annotation files, the 'is active in' relation is used for associations between a gene or gene product and a Cellular Component.
- https://www.ncbi.nlm.nih.gov/pubmed/8654923 The Caenorhabditis elegans cell-death protein CED-3 is a cysteine protease with substrate specificities similar to those of the human CPP32 protease.]
- The paper shows that ced-3 localizes to the cytosol
- Examplar: http://noctua.berkeleybop.org/editor/graph/gomodel:593423e000000013
Quality Control Checks
Relations Ontology
Review Status
Last reviewed: May 11, 2018