MENGO Cellulosome: Difference between revisions

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part_of: GO:XXXXXXX11! Cellulosome part
part_of: GO:XXXXXXX11! Cellulosome part
[GOC:MENGO_EP]
====GO:XXXXXX13====cellulosomal scaffolding proteins
namespace: cellular_component
def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes.\
 
part_of: GO:XXXXXXX11! cellulosome part


[GOC:MENGO_EP]
[GOC:MENGO_EP]

Revision as of 08:21, 17 May 2011

Working Group Members

Trudy_5/10/11

BIOLOGICAL PROCESS ONTOLOGY

GO:XXXXXX3:cellulosome assembly

namespace: biological_process

def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall

is_a: GO:0030031! cell projection assembly

comment: Check Cellulosome definition in GO to see if it should be changed.

Synonyms: Protuberances, appendage

[GOC:MENGO_TT]

GO:XXXXXX4:regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

regulates ( R) GO:XXXXXX3! cellulosome assembly

[GOC:MENGO_TT]

GO:XXXXXX5:positive regulation of cellulosome assembly

namespace: biological_process

def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX6:negative regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX8:maintenance of location on cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]


GO:XXXXXX9:maintenance of protein complex location on cell surface

namespace: biological_process

def: “The process in which a protein complex is anchored to the cell surface”

is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]

GO:XXXXXX:cellulosome anchoring to cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface

cue: GO:0032065 cortical protein anchoring

[GOC:MENGO_TT]

GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.

is_a: GO:0009056 catabolic process!

[GOC:MENGO_TT]

GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins is_a: GO: XXXXXX17!

[GOC:MENGO_TT]

GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17

[GOC:MENGO_TT]

GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17!

[GOC:MENGO_TT]


Trudy_5/10/11

MOLECULAR FUNCTION ONTOLOGY

GO:XXXXXX12:cellulosome protein anchor

namespace: molecular_function

def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. is_a: GO:0043495 ! protein anchor

[GOC:MENGO_TT]

GO:XXXXXX21:cellulose binding via cellulosome protein

namespace: molecular function

def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM)

is_a : GO:0030248! Cellulose binding

We can add via CBM if we want to be more specific

[GOC:MENGO_TT]

Endang_05/17/11

CELLULAR COMPONENT

GO:XXXXXX11:cellulosome part

namespace: cellular_component

def: Any constituent part of a cellulosome, an extracellular multi-enzyme complex containing several different enzymes aligned on a non-catalytic scaffolding glycoprotein

part_of: GO:0043263! Cellulosome

[GOC:MENGO_EP]

GO:XXXXXX12: cellulosome anchorage protein

namespace: cellular_component

def: proteins which anchor the cellulosome or individual enzymes to the bacterial cell surface. It may have the S Layer Homolog (SLH) modules or SLH domains

part_of: GO:XXXXXXX11! Cellulosome part

[GOC:MENGO_EP]

====GO:XXXXXX13====cellulosomal scaffolding proteins

namespace: cellular_component

def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes.\

part_of: GO:XXXXXXX11! cellulosome part

[GOC:MENGO_EP]