Difference between revisions of "MENGO Cellulosome"

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[[Category:Content_MENGO]]
Working Group Members
Working Group Members
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==Trudy_5/10/11==
===BIOLOGICAL PROCESS ONTOLOGY===
====GO:XXXXXX3:cellulosome assembly====
namespace: biological_process
def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall
is_a: GO:0030031! cell projection assembly
comment: Check Cellulosome definition in GO to see if it should be changed.
 
Synonyms: Protuberances, appendage
[GOC:MENGO_TT]
====GO:XXXXXX4:regulation of cellulosome assembly====
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
regulates ( R) GO:XXXXXX3! cellulosome assembly
[GOC:MENGO_TT]
====GO:XXXXXX5:positive regulation of cellulosome assembly====
namespace: biological_process
def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
====GO:XXXXXX6:negative regulation of cellulosome assembly====
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
====GO:XXXXXX8:maintenance of location on cell surface====
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO:0051235! maintenance of  location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
====GO:XXXXXX9:maintenance of protein complex location on cell surface====
namespace: biological_process
def: “The process in which a protein complex is anchored to the cell surface”
is_a: GO:XXXXXX8! maintenance of  location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
====GO:XXXXXX:cellulosome anchoring to cell surface====
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface
cue: GO:0032065 cortical protein anchoring
[GOC:MENGO_TT]
====GO:XXXXXX17:catabolism of plant cell wall  components via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.
is_a: GO:0009056 catabolic process!
[GOC:MENGO_TT]
====GO:XXXXXX18:catabolism of plant cell wall  cellulose via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins
is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
====GO:XXXXXX12:catabolism of plant cell wall  hemicellulose via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17
[GOC:MENGO_TT]
====GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
==Trudy_5/10/11==
===MOLECULAR FUNCTION ONTOLOGY===
====GO:XXXXXX12:cellulosome protein anchor====
namespace: molecular_function
def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”.
is_a: GO:0043495 ! protein anchor
[GOC:MENGO_TT]
====GO:XXXXXX21:cellulose binding via cellulosome protein====
namespace: molecular function
def:Interacting selectively and non-covalently with cellulose via cellulosome protein  containing carbohydrate binding domain (CBM)
is_a : GO:0030248! Cellulose binding
We can add via CBM if we want to be more specific
[GOC:MENGO_TT]
==Endang_05/17/11==
====GO:XXXXXX22: cellulose binding via interaction of Cohesin type I and Dockerin type I====
namespace: molecular_function
def:  Interacting selectively and non-covalently with cellulose via interaction of Cohesin type I with Dockerin type I
is_a : GO:0030248! Cellulose binding
[GOC:MENGO_EP]
====GO:XXXXXX23: cellulose binding via interaction of Cohesin type II and Dockerin type II====
namespace: molecular_function
def:  Interacting selectively and non-covalently with cellulose via interaction of Cohesin type II with Dockerin type II
is_a : GO:0030248! Cellulose binding
[GOC:MENGO_EP]
====GO:XXXXXX24: cellulose binding via interaction of Cohesin type III and Dockerin type III====
namespace: molecular_function
def:  Interacting selectively and non-covalently with cellulose via interaction of Cohesin type III with Dockerin type III
is_a : GO:0030248! Cellulose binding
[GOC:MENGO_EP]
==Endang_05/17/11==
===CELLULAR COMPONENT===
====GO:XXXXXX11: cellulosome part====
namespace: cellular_component
def: Any constituent part of a cellulosome, an extracellular multi-enzyme complex containing several different enzymes aligned on a non-catalytic scaffolding glycoprotein
part_of: GO:0043263! Cellulosome
[GOC:MENGO_EP]
====GO:XXXXXX12: cellulosome anchorage protein====
namespace: cellular_component
def: proteins which anchor the cellulosome or individual enzymes to the bacterial cell surface.  It may have the S Layer Homolog (SLH) modules or SLH domains
part_of: GO:XXXXXXX11! Cellulosome part
[GOC:MENGO_EP]
====GO:XXXXXX13: cellulosomal scaffolding proteins====
namespace: cellular_component
def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes. In cellulosome, this group of proteins is named Scaffoldin.  Its function is to organize and position other protein subunits into cellulosome
 
part_of: GO:XXXXXXX11! cellulosome part
[GOC:MENGO_EP]
====GO:XXXXXX14: Scaffoldin containing type I Cohesin ====
namespace: cellular_component
def: Scaffoldin protein containing type I Cohesin domain.  Type I Cohesin domain will interact with type I Dockerin which is part of the catalytic protein in cellulosome 
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins
[GOC:MENGO_EP]
====GO:XXXXXX15: Scaffoldin containing type II Cohesin ====
namespace: cellular_component
def: Scaffoldin protein containing type II Cohesin domain.  Type II Cohesin domain will interact with type II Dockerin which is part of the catalytic protein in cellulosome 
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins
[GOC:MENGO_EP]
====GO:XXXXXX16: Scaffoldin containing type III Cohesin ====
namespace: cellular_component
def: Scaffoldin protein containing type III Cohesin domain.  Type III Cohesin domain will interact with type III Dockerin which is part of the catalytic protein in cellulosome 
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins
[GOC:MENGO_EP]
==Trudy_05/29/11==
====GO:XXXXXX91:primary cell wall cellulose synthase complex====
namespace: cellular component
def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the primary cell wall
is_a : GO:0010330: cellulose synthase complex
[GOC:MENGO_TT]
====GO:XXXXXX92: secondary cell wall cellulose synthase complex====
namespace: cellular  component
def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the secondary cell wall
is_a : GO:0010330: cellulose synthase complex
[GOC:MENGO_TT]
==Trudy_07/12/11==
====GO:XXXXXX92: scaffoldin protein binding====
namespace: molecular function
def:
is_a : protein binding
[GOC:MENGO_TT]

Latest revision as of 17:56, 27 May 2014

Working Group Members

Trudy_5/10/11

BIOLOGICAL PROCESS ONTOLOGY

GO:XXXXXX3:cellulosome assembly

namespace: biological_process

def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall

is_a: GO:0030031! cell projection assembly

comment: Check Cellulosome definition in GO to see if it should be changed.

Synonyms: Protuberances, appendage

[GOC:MENGO_TT]

GO:XXXXXX4:regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

regulates ( R) GO:XXXXXX3! cellulosome assembly

[GOC:MENGO_TT]

GO:XXXXXX5:positive regulation of cellulosome assembly

namespace: biological_process

def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX6:negative regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX8:maintenance of location on cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]


GO:XXXXXX9:maintenance of protein complex location on cell surface

namespace: biological_process

def: “The process in which a protein complex is anchored to the cell surface”

is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]

GO:XXXXXX:cellulosome anchoring to cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface

cue: GO:0032065 cortical protein anchoring

[GOC:MENGO_TT]

GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.

is_a: GO:0009056 catabolic process!

[GOC:MENGO_TT]

GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins is_a: GO: XXXXXX17!

[GOC:MENGO_TT]

GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17

[GOC:MENGO_TT]

GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17!

[GOC:MENGO_TT]


==Trudy_5/10/11==

MOLECULAR FUNCTION ONTOLOGY

GO:XXXXXX12:cellulosome protein anchor

namespace: molecular_function

def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. is_a: GO:0043495 ! protein anchor

[GOC:MENGO_TT]

GO:XXXXXX21:cellulose binding via cellulosome protein

namespace: molecular function

def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM)

is_a : GO:0030248! Cellulose binding

We can add via CBM if we want to be more specific

[GOC:MENGO_TT]

Endang_05/17/11

GO:XXXXXX22: cellulose binding via interaction of Cohesin type I and Dockerin type I

namespace: molecular_function

def: Interacting selectively and non-covalently with cellulose via interaction of Cohesin type I with Dockerin type I

is_a : GO:0030248! Cellulose binding

[GOC:MENGO_EP]


GO:XXXXXX23: cellulose binding via interaction of Cohesin type II and Dockerin type II

namespace: molecular_function

def: Interacting selectively and non-covalently with cellulose via interaction of Cohesin type II with Dockerin type II

is_a : GO:0030248! Cellulose binding

[GOC:MENGO_EP]


GO:XXXXXX24: cellulose binding via interaction of Cohesin type III and Dockerin type III

namespace: molecular_function

def: Interacting selectively and non-covalently with cellulose via interaction of Cohesin type III with Dockerin type III

is_a : GO:0030248! Cellulose binding

[GOC:MENGO_EP]


Endang_05/17/11

CELLULAR COMPONENT

GO:XXXXXX11: cellulosome part

namespace: cellular_component

def: Any constituent part of a cellulosome, an extracellular multi-enzyme complex containing several different enzymes aligned on a non-catalytic scaffolding glycoprotein

part_of: GO:0043263! Cellulosome

[GOC:MENGO_EP]

GO:XXXXXX12: cellulosome anchorage protein

namespace: cellular_component

def: proteins which anchor the cellulosome or individual enzymes to the bacterial cell surface. It may have the S Layer Homolog (SLH) modules or SLH domains

part_of: GO:XXXXXXX11! Cellulosome part

[GOC:MENGO_EP]

GO:XXXXXX13: cellulosomal scaffolding proteins

namespace: cellular_component

def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes. In cellulosome, this group of proteins is named Scaffoldin. Its function is to organize and position other protein subunits into cellulosome

part_of: GO:XXXXXXX11! cellulosome part

[GOC:MENGO_EP]

GO:XXXXXX14: Scaffoldin containing type I Cohesin

namespace: cellular_component

def: Scaffoldin protein containing type I Cohesin domain. Type I Cohesin domain will interact with type I Dockerin which is part of the catalytic protein in cellulosome

part_of: GO:XXXXXXX13! cellulosome scaffolding proteins

[GOC:MENGO_EP]


GO:XXXXXX15: Scaffoldin containing type II Cohesin

namespace: cellular_component

def: Scaffoldin protein containing type II Cohesin domain. Type II Cohesin domain will interact with type II Dockerin which is part of the catalytic protein in cellulosome

part_of: GO:XXXXXXX13! cellulosome scaffolding proteins

[GOC:MENGO_EP]


GO:XXXXXX16: Scaffoldin containing type III Cohesin

namespace: cellular_component

def: Scaffoldin protein containing type III Cohesin domain. Type III Cohesin domain will interact with type III Dockerin which is part of the catalytic protein in cellulosome

part_of: GO:XXXXXXX13! cellulosome scaffolding proteins

[GOC:MENGO_EP]


Trudy_05/29/11

GO:XXXXXX91:primary cell wall cellulose synthase complex

namespace: cellular component

def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the primary cell wall

is_a : GO:0010330: cellulose synthase complex [GOC:MENGO_TT]

GO:XXXXXX92: secondary cell wall cellulose synthase complex

namespace: cellular component

def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the secondary cell wall

is_a : GO:0010330: cellulose synthase complex

[GOC:MENGO_TT]


Trudy_07/12/11

GO:XXXXXX92: scaffoldin protein binding

namespace: molecular function

def:

is_a : protein binding

[GOC:MENGO_TT]