MENGO Hydrogen biosynthesis: Difference between revisions
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[[Category:Content_MENGO]] | |||
Working group | Working group | ||
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* | * | ||
==Trudy_06/23/11== | |||
====GO:XXXXXX146 :hydrogenase mediated hydrogen biosynthesis==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
http://www.fao.org/docrep/w7241e/w7241e0g.htm | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :regulation of hydrogenase mediated hydrogen biosynthesis==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
http://www.fao.org/docrep/w7241e/w7241e0g.htm | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :hydrogenase mediated hydrogen biosynthesis==== | ====GO:XXXXXX146 :positive regulation of hydrogenase mediated hydrogen biosynthesis==== | ||
namespace: biological_process | namespace: biological_process | ||
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is_a : | is_a : | ||
http://www.fao.org/docrep/w7241e/w7241e0g.htm | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :negative regulation of hydrogenase mediated hydrogen biosynthesis==== | |||
namespace: biological_process | |||
def: | |||
http://www.fao.org/docrep/w7241e/w7241e0g.htm | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :nitrogenase mediated hydrogen biosynthesis==== | ====GO:XXXXXX146 :nitrogenase mediated hydrogen biosynthesis==== | ||
namespace: biological_process | |||
def: | |||
is_a : | |||
http://www.fao.org/docrep/w7241e/w7241e0g.htm | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :regulation of nitrogenase mediated hydrogen biosynthesis==== | |||
namespace: biological_process | namespace: biological_process | ||
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is_a : | is_a : | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :positive regulation of nitrogenase mediated hydrogen biosynthesis==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :negative positive regulation of nitrogenase mediated hydrogen biosynthesis==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 bioynthesis of iron molybdenum cofactor of nitrogenase==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
synonym:bioynthesis of FeMoco of nitrogenase | |||
PMID:17521738, PMID:17203313,PMID:16893897 | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :Pyruvate fermentation to Hydrogen==== | ====GO:XXXXXX146 :Pyruvate fermentation to Hydrogen==== | ||
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is_a : | is_a : | ||
[GOC:MENGO_TT] | |||
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is_a : | is_a : | ||
synonym: Dark fermentation | synonym: Dark fermentation | ||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
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[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO: | |||
====GO:XXXXXX146: Glycerol fermentation to Hydrogen==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
synonym: | |||
PMID:20615687 | |||
Halanaerobium saccharolyticum subsp.saccharolyticum | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :Regulation of Glycerol fermentation to Hydrogen==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
synonym: | |||
PMID:20615687 | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146 :Positive regulation of Glycerol fermentation to Hydrogen==== | |||
namespace: biological_process | namespace: biological_process | ||
Line 88: | Line 194: | ||
is_a : | is_a : | ||
synonym: | |||
PMID:20615687 | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX146: Negative regulation of Glycerol fermentation to Hydrogen==== | |||
namespace: biological_process | |||
def: | |||
is_a : | |||
PMID:20615687 | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
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====GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via | ====GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via acetyl Co-A==== | ||
namespace: biological_process | namespace: biological_process | ||
Line 105: | Line 223: | ||
====GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via | |||
====GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via acetoacetyl Co-A==== | |||
namespace: biological_process | namespace: biological_process | ||
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====GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via Butyryl CoA ==== | |||
====GO:XXXXXX147 :Hydrogen | |||
namespace: biological_process | namespace: biological_process | ||
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[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
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[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX14: biosynthesis of H cluster ==== | |||
namespace: biological_process | |||
def: The reactions that go into the formation of teh H-cluster complex, catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom | |||
is_a : | |||
Synonym: | |||
PMID:21673792 | |||
[GOC:MENGO_TT] | |||
===CELLULAR COMPONENT=== | |||
====GO:XXXXXX148 :Ni-Fe Hydrogenase complex==== | ====GO:XXXXXX148 :Ni-Fe Hydrogenase complex==== | ||
Line 338: | Line 478: | ||
PMID:1779767 | PMID:1779767 | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX14:H cluster complex ==== | |||
namespace: biological_process | |||
def: A catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom | |||
is_a : | |||
Synonym: | |||
PMID:21673792 | |||
[GOC:MENGO_TT] | |||
==== GO:0009326: heterocyst==== | |||
namespace: cellular component | |||
def:A differentiated cell that carries out nitrogen fixation, often found in cyanobacteria | |||
is_a : GO:0043234 protein complex | |||
PMID:16390435 | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] |
Latest revision as of 18:58, 27 May 2014
Working group
Trudy_06/23/11
GO:XXXXXX146 :hydrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a :
http://www.fao.org/docrep/w7241e/w7241e0g.htm [GOC:MENGO_TT]
GO:XXXXXX146 :regulation of hydrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a :
http://www.fao.org/docrep/w7241e/w7241e0g.htm [GOC:MENGO_TT]
GO:XXXXXX146 :positive regulation of hydrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a :
http://www.fao.org/docrep/w7241e/w7241e0g.htm [GOC:MENGO_TT]
GO:XXXXXX146 :negative regulation of hydrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
http://www.fao.org/docrep/w7241e/w7241e0g.htm
[GOC:MENGO_TT]
GO:XXXXXX146 :nitrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a :
http://www.fao.org/docrep/w7241e/w7241e0g.htm
[GOC:MENGO_TT]
GO:XXXXXX146 :regulation of nitrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a : [GOC:MENGO_TT]
GO:XXXXXX146 :positive regulation of nitrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX146 :negative positive regulation of nitrogenase mediated hydrogen biosynthesis
namespace: biological_process
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX146 bioynthesis of iron molybdenum cofactor of nitrogenase
namespace: biological_process
def:
is_a : synonym:bioynthesis of FeMoco of nitrogenase
PMID:17521738, PMID:17203313,PMID:16893897
[GOC:MENGO_TT]
GO:XXXXXX146 :Pyruvate fermentation to Hydrogen
namespace: biological_process
def:
is_a : [GOC:MENGO_TT]
GO:XXXXXX146 :Pyruvate fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: Dark fermentation
[GOC:MENGO_TT]
GO:XXXXXX146 :Regulation of Pyruvate fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: Dark fermentation [GOC:MENGO_TT]
GO:XXXXXX146 :Positive regulation of Pyruvate fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: Dark fermentation [GOC:MENGO_TT]
GO:XXXXXX146: Negative regulation of Pyruvate fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: Dark fermentation [GOC:MENGO_TT]
GO:XXXXXX146: Glycerol fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: PMID:20615687 Halanaerobium saccharolyticum subsp.saccharolyticum [GOC:MENGO_TT]
GO:XXXXXX146 :Regulation of Glycerol fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: PMID:20615687 [GOC:MENGO_TT]
GO:XXXXXX146 :Positive regulation of Glycerol fermentation to Hydrogen
namespace: biological_process
def:
is_a : synonym: PMID:20615687 [GOC:MENGO_TT]
GO:XXXXXX146: Negative regulation of Glycerol fermentation to Hydrogen
namespace: biological_process
def:
is_a : PMID:20615687 [GOC:MENGO_TT]
GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via acetyl Co-A
namespace: biological_process
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via acetoacetyl Co-A
namespace: biological_process
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via Butyryl CoA
namespace: biological_process
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX147 :Hydrogen biosynthesis from formate
namespace: biological_process
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX147 :biosynthesis of formate dehydrogenase complex
namespace: biological_process
def:
is_a : synonyms:biosynthesis of formate-hydrogenlyase complex, biosynthesis of FHL complex, biosynthesis of formate hydrogen lyase complex
PMID:1779767 [GOC:MENGO_TT]
GO:XXXXXX147 :regulation of formate dehydrogenase complex biosynthesis
namespace: biological_process
def:
is_a : synonyms:regulation of formate-hydrogenlyase complex biosynthesis, regulation of FHL complex biosynthesis, regulation of formate hydrogen lyase complex biosynthesis
PMID:1779767 [GOC:MENGO_TT]
GO:XXXXXX147 :positive regulation of formate dehydrogenase complex biosynthesis
namespace: biological_process
def:
is_a : synonyms:positive regulation of formate-hydrogenlyase complex biosynthesis, positive regulation of FHL complex biosynthesis, positive regulation of formate hydrogen lyase complex biosynthesis
PMID:1779767 [GOC:MENGO_TT]
GO:XXXXXX147 :negative regulation of formate dehydrogenase complex biosynthesis
namespace: biological_process
def:
is_a : synonyms:negative regulation of formate-hydrogenlyase complex biosynthesis, negative regulation of FHL complex biosynthesis, negative regulation of formate hydrogen lyase complex biosynthesis
PMID:1779767 [GOC:MENGO_TT]
GO:XXXXXX147 :Hydrogen biosynthesis from carbon monoxide
namespace: biological_process
def:
is_a : synonyms: Hydrogen biosynthesis from CO PMID:1779767 [GOC:MENGO_TT]
GO:XXXXXX147 :Hydrogen biosynthesis from plastoquinone
namespace: biological_process
def:
is_a : synonyms: Hydrogen biosynthesis from CO PMID:1779767 [GOC:MENGO_TT]
GO:XXXXXX147 :Fe-S cluster biosynthesis
namespace: biological_process
def:
is_a : PMID:21393052, PMID:20812788 [GOC:MENGO_TT]
GO:XXXXXX147: Regulation of Fe-S cluster biosynthesis
namespace: biological_process
def:
is_a : PMID:21393052, PMID:20812788 , PMID:18322036
[GOC:MENGO_TT]
GO:XXXXXX147:positive regulation of Fe-S cluster biosynthesis
namespace: biological_process
def:
is_a : PMID:21393052, PMID:20812788 , PMID:18322036
[GOC:MENGO_TT]
GO:XXXXXX147:negative regulation of Fe-S cluster biosynthesis
namespace: biological_process
def:
is_a : PMID:21393052, PMID:20812788 , PMID:18322036
[GOC:MENGO_TT]
GO:XXXXXX147 :Fe-S cluster biosynthesis via iron sulfur cluster pathway
namespace: biological_process
def:
is_a : Synonym: Fe-S cluster biosynthesis via ISC- encoded pathway Iron, Sulfur biosynthesis via ISC- encoded pathway Iron, sulfur biosynthesis via iron sulfur cluster pathway PMID:21393052, PMID:19675643
[GOC:MENGO_TT]
GO:XXXXXX147 :Fe-S cluster biosynthesis via sulfur formation pathway
namespace: biological_process
def:
is_a : Synonym: Fe-S cluster biosynthesis via SUF- pathway Iron, Sulfur biosynthesis via sulfur formation pathway Iron, sulfur biosynthesis via SUF pathway PMID:21393052, PMID:19675643
[GOC:MENGO_TT]
GO:XXXXXX14: biosynthesis of H cluster
namespace: biological_process
def: The reactions that go into the formation of teh H-cluster complex, catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom
is_a : Synonym: PMID:21673792 [GOC:MENGO_TT]
CELLULAR COMPONENT
GO:XXXXXX148 :Ni-Fe Hydrogenase complex
namespace: Cellular component
def:
is_a :
[GOC:MENGO_TT]
GO:XXXXXX148 :Fe-Fe Hydrogenase complex
namespace: cellular component
def:
is_a :
[GOC:MENGO_TT]
GO:0009326: formate dehydrogenase complex
namespace: cellular component
def:An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2)
is_a : GO:0043234 protein complex
comment: needs synonyms synonyms: formate-hydrogenlyase complex, FHL complex, formate hydrogen lyase complex
PMID:1779767
[GOC:MENGO_TT]
GO:XXXXXX14:H cluster complex
namespace: biological_process
def: A catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom
is_a : Synonym: PMID:21673792 [GOC:MENGO_TT]
GO:0009326: heterocyst
namespace: cellular component
def:A differentiated cell that carries out nitrogen fixation, often found in cyanobacteria
is_a : GO:0043234 protein complex
PMID:16390435
[GOC:MENGO_TT]