Manager 20Oct10: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
 
(4 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:GO_Managers_Meetings]]
==Present:==
==Present:==
Kara Dolinski, Pascale Gaudet, Rachel, Jane, David Hill, Rama, Chris, Mike C, Judy, Suzi, Paul Sternberg
Kara Dolinski, Pascale Gaudet, Rachel, Jane, David Hill, Rama, Chris, Mike C, Judy, Suzi, Paul Sternberg, Paul Thomas


==Discussion topics==
==Discussion topics==
Line 26: Line 27:


==Ref Genome==
==Ref Genome==
Discussed pilot study for tree annotation.  To do this correctly, we should add at least a couple more tree annotators and do a wider range, ~20 hrs for two weeks, plan to do this for the first two weeks in December.


==Ontology Development==
==Ontology Development==
Line 34: Line 37:
==Software==
==Software==
*AmiGO 1.8 out soon
*AmiGO 1.8 out soon
*OBO-Edit 2.1 - addresses outstanding bugs. There will be another maintenance release - 2.2 - before freeze.
*OBO-Edit 2.1 - addresses outstanding bugs. There will be another maintenance release - 2.2 - before freeze.  See Time Line page for details.
*Have money for 3 one-year positions - Berkeley position filled, two still available at Stanford.==Agenda==
*Have money for 3 one-year positions - Berkeley position filled, two still available at Stanford.

Latest revision as of 15:21, 27 June 2014

Present:

Kara Dolinski, Pascale Gaudet, Rachel, Jane, David Hill, Rama, Chris, Mike C, Judy, Suzi, Paul Sternberg, Paul Thomas

Discussion topics

Annotation

  • Updating annotation documentation: Rama. Talking to Amelia about final touches (tabs on pages); text is good to go.

Evidence Proposal

http://gocwiki.geneontology.org/index.php/Chain_of_Evidence

  • ECO proposal:
    • Pascale mentioned that other curators were interested in knowing about the new ECO proposal.
    • Put the proposal (and all the comments so far) together, get some specific use cases.
    • Have a conf.call with Michele to come consensus and to further flesh out/finalize
    • After it is more polished, suggest to Michele that she perhaps send proposal to GO Friends, biocurator mailing list.
  • Protein binding:
    • At the GOC meeting we discussed taking the data from these interaction databases to incorporate these data into GO, and vice-versa. Since the GOC, BioGRID has been working with WormBase and ZFin on leveraging their GO protein binding annotations to add these as interactions into BioGRID/IMEX. Kara and Harold will discuss what to do for MGI. Chris will explore the data flow in the other direction (BioGRID/IMEX -> GO). Binding Workflow Proposal In general, we need to think about whether/how we want to remain in the protein binding/interaction annotation business.
  • Evidence summation:
    • Rama started a wiki page with some notes

http://gocwiki.geneontology.org/index.php/Chain_of_Evidence

Again, not sure where it fits in terms of priority. Seems like ECO needs to be in place first. We have a WG assembled from Bar Harbor and start discussing this regularly. (Rama will add a link to Alex's page). For the WG task list: pilot study on richer annotation, three different use cases.

Ref Genome

Discussed pilot study for tree annotation. To do this correctly, we should add at least a couple more tree annotators and do a wider range, ~20 hrs for two weeks, plan to do this for the first two weeks in December.

Ontology Development

  • Ruth emailed to request some ontology development meetings - Judy will forward email
  • GOCHE completion - in time for grant? Paper probably be finished in time for renewal in Jan 2011, implementation some time later.
  • BP x BP cross-products implemented

Software

  • AmiGO 1.8 out soon
  • OBO-Edit 2.1 - addresses outstanding bugs. There will be another maintenance release - 2.2 - before freeze. See Time Line page for details.
  • Have money for 3 one-year positions - Berkeley position filled, two still available at Stanford.