Manager 6November2013: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
**Would be good to have a coordinated set of talks - start a wiki page for ideas? | **Would be good to have a coordinated set of talks - start a wiki page for ideas? | ||
**Submit a paper for the Database issue? Just abstracts? | **Submit a paper for the Database issue? Just abstracts? | ||
**Who is going to the meeting? | |||
'''Action Item:'''Add abstract deadline to GO calendar - DONE [Suzi] | '''Action Item:'''Add abstract deadline to GO calendar - DONE [Suzi] | ||
Papers - November 15th | |||
Abstract for Posters - February | |||
'''Action Item:'''Create wiki page for ideas. | '''Action Item:'''Create wiki page for ideas. | ||
Ideas: enrichment analysis strategies, MGI's phenotype to BP pipeline | Ideas: enrichment analysis strategies, MGI's phenotype to BP pipeline |
Revision as of 12:09, 6 November 2013
Agenda Items
Present: Rama, Rachael, David, Kimberly, Chris, Judy, Suzi
- Can we allow use of both a published paper and a GO_REF in the same annotation? Cardinality of the reference field can be >1, but the annotation documentation only refers to cases where a publication has identifiers in different databases, e.g. PubMed and a MOD database. I'd like to include a GO_REF for the WormBase Phenotype2GO-based annotations, but also still include the original publication from which the phenotype information was curated. The GO_REF would explain the methodology used to create the resulting Biological Process annotation. [Kimberly]
- Good idea. We can create a new subclass of IMP in ECO and use the gaf to eco mapping (which takes a evidence code + reference pair and maps it to an evidence type). But really we need a way to represent combinatorial evidence. This is analogous to F->P and P->C inferences, where we embed the fact an inference was made using assigned_by=GOC, which is not ideal.
- BioCurator Meeting - What are GO's plans for the meeting?
- Would be good to have a coordinated set of talks - start a wiki page for ideas?
- Submit a paper for the Database issue? Just abstracts?
- Who is going to the meeting?
Action Item:Add abstract deadline to GO calendar - DONE [Suzi] Papers - November 15th Abstract for Posters - February
Action Item:Create wiki page for ideas.
Ideas: enrichment analysis strategies, MGI's phenotype to BP pipeline