Manager 7May2014: Difference between revisions
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* Annotation training material on web site | * Annotation training material on web site | ||
* Annotation/help forum | * Annotation/help forum | ||
===Quarterly GOC conference call=== | |||
* Once a quarter, report on each to the ‘priorities' and ‘next steps’ for each group. We would have two main objectives for each quarter. | |||
* Next meeting (teleconference) would be in June. | |||
* All GO invited to ‘listen in’, managers, directors, selected others would carry most of reporting and discussion. | |||
=====Our proposal for first meeting, which necessarily would be a ‘start’.===== | |||
* Litrerature Annotation and Corrodination (Rama?) | |||
** management and coordination and standards | |||
** Annotation efforts | |||
* Phylogenetic Annotations (Huaiyu?) | |||
** management and coordination | |||
** annotation report | |||
* Software | |||
** Web presence | |||
** annotation and ontology QC and files | |||
** maintain db and resources |
Revision as of 11:07, 7 May 2014
Present:
Agenda
GO meeting organization
- Dates are set: Oct 13-15, 2014 - 3 full days (Room availability yet to be confirmed)
- Registration deadline: Sept 5th
- A registration site has been set up : https://docs.google.com/forms/d/1Q8nudtqusn7OrcJO1IC7KZPLUy2Rijkr_k6tI6OQUbI/viewform?sid&c=0&w=1&token&usp=mail_form_link
- I'll keep people updated as soon as there is more information coming up.
- Pascale
Proposed priorities for GOC working groups
Ontology development
- term requests
- OWLification
- support for LEGO (MF restructuring, …)
- begin and end functions for cellular processes
- logical definitions for terms that include cell type, anatomy terms
- MF and RHEA
Literature annotation
- QC metrics for annotations
- defining annotation standards, training, documentation
- focus on planned PAINT annotation families
Phylogenetic annotation
- Jamboree until Barcelona meeting: GO-funded curators should spend GO-funded time on this project through end of Sept.? [5 curators full time for 6 weeks or 20% time for 5-6 curators]= 5-10 families per week
- paper on QC assessment using PAINT
Software
- Drupal Web Site & AmiGO (Seth needs to move on, Moni + Stanford?)
- migrate all remaining cron jobs to Jenkins (Heiko)
- LEGO annotation tool prototype release (Seth)
- Complete migration of ontology editing to full OWL (protege plug-ins, Heiko, Chris, Simon)
- jsPAINT in view-only mode made public (Seth)
- jsPAINT roll-out (Seth, Suzi)
- mySQL/LEAD retirement (will take a while)
- Amazon Cloud for GO website and AmiGO (Mike/Stuart/Seth)
- CANTO deployment (Chris, Seth, Kim, Rama)
- LEGO mirrors of graphRDF/OWL
- GAF-GPAD roundtripping (Mary?)
- LEGO/OWL ←→ GPAD converters (Mary?)
- Graphic display of enrichment results (Mary?)
- Term Genie templates for CL and UBERON (Heiko, Chris)
- Paper Viewer release-able (i.e. connected to grid/table annot tool, Owl) [Hans-Michael, Juancarlos, Yuling]
- Stabilized enrichment tool (??USC)
- GO-mine retirement, unplugging (Stanford)
- Getting Textpresso to work with MF (in addition to CCC) [Hans-Michael, Kimberly]
- authentication/authorization (software group mutual choice)
- Orion/LEGO import from Reactome
Community
- Annotation training material on web site
- Annotation/help forum
Quarterly GOC conference call
- Once a quarter, report on each to the ‘priorities' and ‘next steps’ for each group. We would have two main objectives for each quarter.
- Next meeting (teleconference) would be in June.
- All GO invited to ‘listen in’, managers, directors, selected others would carry most of reporting and discussion.
Our proposal for first meeting, which necessarily would be a ‘start’.
- Litrerature Annotation and Corrodination (Rama?)
- management and coordination and standards
- Annotation efforts
- Phylogenetic Annotations (Huaiyu?)
- management and coordination
- annotation report
- Software
- Web presence
- annotation and ontology QC and files
- maintain db and resources