Manager Call 2015-10-07: Difference between revisions

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#File names and content (Melanie)
#File names and content (Melanie)
#*There was a proposal to update the content of the files the GOA team is producing, specifically the current goa_"species" file would disappear, and the current goa_ref would be renamed as goa_"species". To minimize confusion for users, we thought it would be best for this change to happen in concert with Kimberly's proposed file renaming.
#*There was a proposal to update the content of the files the GOA team is producing, specifically the current goa_"species" file would disappear, and the current goa_ref would be renamed as goa_"species". To minimize confusion for users, we thought it would be best for this change to happen in concert with Kimberly's proposed file renaming.
#Follow-up: collaboration with Trey Ideker's group on autophagy (Paola/David)
#Follow-up: collaboration with Trey Ideker's group on autophagy (David)
#*This would be really good to show community engagement. Status update, publication plans, etc.
#*This would be really good to show community engagement. Status update, publication plans, etc.
#Moving tickets from Jira (EBI instance, NOT Jira helpdesk) to GitHub (David)
#Moving tickets from Jira (EBI instance, NOT Jira helpdesk) to GitHub (David)
#*See http://wiki.geneontology.org/index.php/Ontology_meeting_2015-09-17#Review_of_Jira_tickets
#*See http://wiki.geneontology.org/index.php/Ontology_meeting_2015-09-17#Review_of_Jira_tickets

Revision as of 04:55, 5 October 2015

Agenda

  1. Action item from Ontology call (Melanie) - MF refactoring
    • GO PIs + Chris M. to determine whether resources can be provided for required improvements to general MF axiomatisation prior to refactoring. This mainly consists of pulling in mappings to ChEBI from Rhea - possibly from other resources #*via EC. Could be simple subclassing axioms if full logical definitions prove problematic. Without this work we will not be able to automate classification under new classes requested by Paul T.
  2. File names and content (Melanie)
    • There was a proposal to update the content of the files the GOA team is producing, specifically the current goa_"species" file would disappear, and the current goa_ref would be renamed as goa_"species". To minimize confusion for users, we thought it would be best for this change to happen in concert with Kimberly's proposed file renaming.
  3. Follow-up: collaboration with Trey Ideker's group on autophagy (David)
    • This would be really good to show community engagement. Status update, publication plans, etc.
  4. Moving tickets from Jira (EBI instance, NOT Jira helpdesk) to GitHub (David)