Manager Call 2017-07-05: Difference between revisions
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Topics: | Topics: | ||
35 protein complex | * 35 protein complex | ||
33 targeting and transport | * 33 targeting and transport | ||
21 metabolism | * 21 metabolism | ||
20 viruses and symbionts | * 20 viruses and symbionts | ||
19 cellular processes | * 19 cellular processes | ||
19 enzymes | * 19 enzymes | ||
19 development | * 19 development | ||
18 cell cycle and DNA processes | * 18 cell cycle and DNA processes | ||
16 neurobiology | * 16 neurobiology | ||
15 signaling | * 15 signaling | ||
13 binding | * 13 binding | ||
11 transcription | * 11 transcription | ||
9 RNA processes | * 9 RNA processes | ||
8 regulation | * 8 regulation | ||
6 cell type | * 6 cell type | ||
5 synapse_project | * 5 synapse_project | ||
4 cellular component | * 4 cellular component | ||
4 MF refactoring | * 4 MF refactoring | ||
4 chromatin | * 4 chromatin | ||
4 immune system | * 4 immune system | ||
4 multiorganism processes | * 4 multiorganism processes | ||
4 start_and_end | * 4 start_and_end | ||
4 translation | * 4 translation | ||
3 miRNA | * 3 miRNA | ||
3 required_for_LEGO | * 3 required_for_LEGO | ||
2 compound terms | * 2 compound terms | ||
2 fatty acid biosynthesis | * 2 fatty acid biosynthesis | ||
2 No_MF_in_GO | * 2 No_MF_in_GO | ||
2 toxin | * 2 toxin | ||
1 Cilia/flagella | * 1 Cilia/flagella | ||
1 autophagy | * 1 autophagy | ||
1 cardiac conduction | * 1 cardiac conduction | ||
1 Protein Complex WG | * 1 Protein Complex WG | ||
1 recombination | * 1 recombination | ||
Revision as of 10:53, 5 July 2017
Joining the Call on Zoom
https://stanford.zoom.us/j/754529609
Agenda
From June 21st Call
Licensing
- The DO has recently gone to a CC0 license. http://disease-ontology.org/
Attributes in Noctua Annotations
- https://github.com/geneontology/go-ontology/issues/13511
- https://github.com/geneontology/noctua/issues/458
New Issues
Signaling Project and Cambridge Meeting
- Project strategy
- We have an annotation call on next Tuesday, July 11th and we should have a (proposed) strategy in place for that call
- Divide each ~two-week period into specific annotation and ontology issues
- For example, first week would be annotation of ligands (and receptors)
- Make sure we strike the right balance between:
- theoretical (relations between MFs, BPs; representation in the ontology)
- practical (consistent annotations; annotation guidelines that reflect experiments reported in the literature)
- Review and flag all existing github tickets in ontology and annotation repositories
- Add signaling label to annotation repository (one exists already in ontology)
- Cambridge meeting, Sunday, October 1st
- Any funding available for non GO-funded groups?
GO AGR Slim
- Modification to AGR slim
- What should AGR/MOD GO curators be doing for this?
Annotation Qualifiers
- What are the next steps?
- Add guidelines to github documentation with examples for use of each BP qualifier (include positive and negative directionality)
- Propose a half-day online working group meeting for this
- acts_upstream_of_or_within
- acts_upstream_of
- involved_in
- regulates
- Decide on SOP for legacy annotations
- This may be different for different annotation groups.
- What would be involved in providing computational approaches to help curators?
Ontology editors
(Pascale) I have added labels to most issues: https://github.com/geneontology/go-ontology/labels
Topics:
- 35 protein complex
- 33 targeting and transport
- 21 metabolism
- 20 viruses and symbionts
- 19 cellular processes
- 19 enzymes
- 19 development
- 18 cell cycle and DNA processes
- 16 neurobiology
- 15 signaling
- 13 binding
- 11 transcription
- 9 RNA processes
- 8 regulation
- 6 cell type
- 5 synapse_project
- 4 cellular component
- 4 MF refactoring
- 4 chromatin
- 4 immune system
- 4 multiorganism processes
- 4 start_and_end
- 4 translation
- 3 miRNA
- 3 required_for_LEGO
- 2 compound terms
- 2 fatty acid biosynthesis
- 2 No_MF_in_GO
- 2 toxin
- 1 Cilia/flagella
- 1 autophagy
- 1 cardiac conduction
- 1 Protein Complex WG
- 1 recombination
Minutes
- On call: