Manager Call 2017-07-05

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Revision as of 10:52, 5 July 2017 by Pascale (talk | contribs)
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Joining the Call on Zoom

https://stanford.zoom.us/j/754529609

Agenda

From June 21st Call

Licensing

Attributes in Noctua Annotations

New Issues

Signaling Project and Cambridge Meeting

  • Project strategy
    • We have an annotation call on next Tuesday, July 11th and we should have a (proposed) strategy in place for that call
    • Divide each ~two-week period into specific annotation and ontology issues
      • For example, first week would be annotation of ligands (and receptors)
    • Make sure we strike the right balance between:
      • theoretical (relations between MFs, BPs; representation in the ontology)
      • practical (consistent annotations; annotation guidelines that reflect experiments reported in the literature)
    • Review and flag all existing github tickets in ontology and annotation repositories
      • Add signaling label to annotation repository (one exists already in ontology)
  • Cambridge meeting, Sunday, October 1st
    • Any funding available for non GO-funded groups?

GO AGR Slim

Annotation Qualifiers

  • What are the next steps?
    • Add guidelines to github documentation with examples for use of each BP qualifier (include positive and negative directionality)
    • Propose a half-day online working group meeting for this
      • acts_upstream_of_or_within
      • acts_upstream_of
      • involved_in
      • regulates
    • Decide on SOP for legacy annotations
      • This may be different for different annotation groups.
      • What would be involved in providing computational approaches to help curators?


Ontology editors

(Pascale) I have added labels to most issues: https://github.com/geneontology/go-ontology/labels

Topics:

35 protein complex 33 targeting and transport 21 metabolism 20 viruses and symbionts 19 cellular processes 19 enzymes 19 development 18 cell cycle and DNA processes 16 neurobiology 15 signaling 13 binding 11 transcription 9 RNA processes 8 regulation 6 cell type 5 synapse_project 4 cellular component 4 MF refactoring 4 chromatin 4 immune system 4 multiorganism processes 4 start_and_end 4 translation 3 miRNA 3 required_for_LEGO 2 compound terms 2 fatty acid biosynthesis 2 No_MF_in_GO 2 toxin 1 Cilia/flagella 1 autophagy 1 cardiac conduction 1 Protein Complex WG 1 recombination


Minutes

  • On call: