Manager Call 2017-10-18: Difference between revisions
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| Line 21: | Line 21: | ||
*****users.yaml | *****users.yaml | ||
****Creating Basic GO Annotations in Noctua | ****Creating Basic GO Annotations in Noctua | ||
*****Basic Noctua Ontologies | |||
*****NEO, GO | |||
*****Graphical Editor | *****Graphical Editor | ||
*****Table Editor | *****Table Editor | ||
| Line 28: | Line 30: | ||
****Incorporating Annotations into Your Database | ****Incorporating Annotations into Your Database | ||
*****GPAD Annotation Preview | *****GPAD Annotation Preview | ||
******Relations in GPAD | |||
******Annotation Extensions in GPAD | |||
*****Downloading Annotation Files from Jenkins | *****Downloading Annotation Files from Jenkins | ||
***Advanced Modeling | ***Advanced Modeling | ||
| Line 33: | Line 37: | ||
*****Relations between Functions | *****Relations between Functions | ||
*****Relations between Functions and Processes | *****Relations between Functions and Processes | ||
****Adding More Biological Context | |||
*****Inputs and Outputs to MFs and BPs | |||
*****Anatomical and Developmental Context | |||
****Reasoning and Annotation Inferences | ****Reasoning and Annotation Inferences | ||
*****Annotation Deepening using Equivalence Axioms | |||
*****Advanced Annotation Extensions | |||
***FAQs ?? Do we need this or is it just another thing that can go stale?? | ***FAQs ?? Do we need this or is it just another thing that can go stale?? | ||
***Feedback | ***Feedback | ||
Revision as of 10:35, 16 October 2017
Agenda
GOC meeting action item review
GOC mailing lists clean up
- Remove/merge some lists
- Remove some people for eg from Managers list ?
Proposed Re-Organization of Noctua Documentation
- Proposed re-organization of Noctua 'landing' page below
- Documentation would be text, screenshots, and videos
- We will try to re-use existing documentation wherever possible, but the goal is to have concise, up-to-date, production worthy instructions
- Source for current documentation lives here: https://github.com/geneontology/noctua
- Can we organize all user documentation into a single folder on github?
- Welcome to Noctua
- Brief 1-2 sentences on GO-CAM and Noctua (what it is)
- Getting Started: The Basics (this section would re-use much of what is currently in the QuickStart Guide)
- GO-CAM Philosophy
- Causal Activity Modeling
- Annotons
- Using Noctua
- Getting a Noctua Account
- GitHub
- users.yaml
- Creating Basic GO Annotations in Noctua
- Basic Noctua Ontologies
- NEO, GO
- Graphical Editor
- Table Editor
- Browsing and Searching Existing Models
- Noctua
- AmiGO
- Incorporating Annotations into Your Database
- GPAD Annotation Preview
- Relations in GPAD
- Annotation Extensions in GPAD
- Downloading Annotation Files from Jenkins
- GPAD Annotation Preview
- Getting a Noctua Account
- Advanced Modeling
- Creating Causal Models of Biological Processes
- Relations between Functions
- Relations between Functions and Processes
- Adding More Biological Context
- Inputs and Outputs to MFs and BPs
- Anatomical and Developmental Context
- Reasoning and Annotation Inferences
- Annotation Deepening using Equivalence Axioms
- Advanced Annotation Extensions
- Creating Causal Models of Biological Processes
- FAQs ?? Do we need this or is it just another thing that can go stale??
- Feedback
- GitHub trackers
- References
- GO-CAM paper when published
- Chapters of the GO Handbook
- Technical Documentation
- For Developers
- Noctua development documentation
- Noctua models repository
- For Developers
- In Progress
- Embeddable widgets
- Model display options
- Network-based enrichment analysis
- GO-CAM Philosophy
- Welcome to Noctua
Minutes
- On call: