Manager Call 2017-10-18: Difference between revisions

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*Source for current documentation lives here:  https://github.com/geneontology/noctua
*Source for current documentation lives here:  https://github.com/geneontology/noctua
*Can we organize all user documentation into a single folder on github?
*Can we organize all user documentation into a single folder on github?
**Welcome to Noctua
*See [https://docs.google.com/document/d/1hmYNEP7lWFwWGJbDOHfsfDvT77yBNRH4IW1TAPyhdqg/edit Outline on Google docs]
***Brief 1-2 sentences on GO-CAM and Noctua (what it is)
**Getting Started: The Basics (this section would re-use much of what is currently in the [http://noctua.berkeleybop.org/doc/quick-start-guide QuickStart Guide])
***GO-CAM Philosophy
****Causal Activity Modeling
****Annotons
***Using Noctua
****Getting a Noctua Account
*****GitHub
*****users.yaml
****Creating Basic GO Annotations in Noctua
*****Basic Noctua Ontologies
*****NEO, GO
*****Graphical Editor
*****Table Editor
****Browsing and Searching Existing Models
*****Noctua
*****AmiGO
****Incorporating Annotations into Your Database
*****GPAD Annotation Preview
******Relations in GPAD
******Annotation Extensions in GPAD
*****Downloading Annotation Files from Jenkins
***Advanced Modeling
****Creating Causal Models of Biological Processes
*****Relations between Functions
*****Relations between Functions and Processes
****Adding More Biological Context
*****Inputs and Outputs to MFs and BPs
*****Anatomical and Developmental Context
****Reasoning and Annotation Inferences
*****Annotation Deepening using Equivalence Axioms
*****Advanced Annotation Extensions
***FAQs ??  Do we need this or is it just another thing that can go stale??
***Feedback
****GitHub trackers
***References
****GO-CAM paper when published
****Chapters of the GO Handbook
***Technical Documentation
****For Developers
*****Noctua development documentation
*****Noctua models repository
***In Progress
****Embeddable widgets
****Model display options
****Network-based enrichment analysis


= Minutes =
= Minutes =

Revision as of 10:53, 16 October 2017

Agenda

GOC meeting action item review

GOC mailing lists clean up

  • Remove/merge some lists
  • Remove some people for eg from Managers list ?

Proposed Re-Organization of Noctua Documentation

  • Proposed re-organization of Noctua 'landing' page below
  • Documentation would be text, screenshots, and videos
    • Note that existing videos hosted on Vimeo are all out-of-date wrt the UI
  • We will try to re-use existing documentation wherever possible, but the goal is to have concise, up-to-date, production worthy instructions
  • Source for current documentation lives here: https://github.com/geneontology/noctua
  • Can we organize all user documentation into a single folder on github?
  • See Outline on Google docs

Minutes

  • On call:
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