Manager Call 2017-10-18: Difference between revisions

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= Agenda =
= Agenda =
== GOC meeting action item review ==
== GOC meeting action item review ==
https://docs.google.com/document/d/1Y9_Mvqes3op36TPHgfaS7K5FHnGZLgUApghIFYyUKR8/edit#
== GOC mailing lists clean up ==
== GOC mailing lists clean up ==
* Remove/merge some lists
* Remove/merge some lists
* Remove some people for eg from Managers list ?
* Remove some people for eg from Managers list ?
== Noctua Documentation ==
== Proposed Re-Organization of Noctua Documentation ==
*Proposed re-organization of [http://noctua.berkeleybop.org/ Noctua 'landing' page]:
*Proposed re-organization of [http://noctua.berkeleybop.org/ Noctua 'landing' page] below
**Welcome to Noctua
*See [https://docs.google.com/document/d/1hmYNEP7lWFwWGJbDOHfsfDvT77yBNRH4IW1TAPyhdqg/edit Outline on Google docs]
***Brief 1-2 sentences on GO-CAM and Noctua (what it is)
*The old [http://wiki.geneontology.org/index.php/LEGO_Specification_Proposal LEGO specification proposal]
**Getting Started: The Basics
*Documentation would be text, screenshots, and videos
***GO-CAM Philosophy
**Note that existing videos hosted on Vimeo are all out-of-date wrt the UI and will need to be re-done
****Causal Activity Modeling
*Goal is to have concise, up-to-date, production-quality instructions
****Annotons
*Source for current documentation on Noctua lives here:  https://github.com/geneontology/noctua
***Using Noctua
**Can we organize all user documentation into a single folder on github?
****Getting a Noctua Account
*Good news: we can/will re-use existing documentation wherever possible
*****GitHub
 
*****users.yaml
= Minutes =
****Creating Basic GO Annotations in Noctua
*On call: Pascale, Kimberley, Chris, Huaiyu, Paul D., Judy, Suzi, David H.
*****Graphical Editor
 
*****Table Editor
==Review action item. (Pascale)==
****Browsing and Searching Existing Models
 
*****Noctua
===Implementation of new qualifier “causally upstream of or within”, with the more specific children “causally upstream of” and “involved in”===
*****AmiGO
*Pascale: A ticket was added. Propose to implement by April next year (next GO meeting). This is for the legacy annotations.  
****Incorporating Annotations into Your Database
*David: Probably should be done sooner
*****GPAD Annotation Preview
*Chris: Add a title of the ticket.
*****Downloading Annotation Files from Jenkins
*David: What is the resource?
****GitHub trackers
*Chris: New GAF version
***Advanced Modeling
*Priority?
****Creating Causal Models of Biological Processes
*Chris: High. Seth and Eric will work on it.
*****Relations between Functions
*Judy: Needs more transparency. Make sure it is done on time.
*****Relations between Functions and Processes
 
****Reasoning and Annotation Inferences
===Regulation term===
***FAQs
 
***Feedback
===Multiple qualifier===
***Technical Documentation
come up with proposal before the next GO meeting.
****For Developers
 
*****Noctua development documentation
===CC qualifier and colocalize with===
*****Noctua models repository
These are two different action items. Can be grouped together.
***In Progress
 
****Embeddable widgets
===Protein complex===
****Model display options
 
****Network-based enrichment analysis
Come up with a proposal before the next GO meeting
 
 
===Noctua===
*Data flow - Work with the users.
*The priority is to push Noctua to the production level. Huaiyu suggested to use this project for a project management exercise. Pascale will work with Chris to set up deadlines for all requirements. Chris pointed out that there was no real requirement documents. Everything is in github tickets. There are two types of tickets: bugs and new features.
*End-user tool (visualization)
 


To be finished at the next manager call.


The other two items on the agenda were not discussed, and will be postponed to the next call.




[[Category: GO Managers Meetings]]
[[Category: GO Managers Meetings]]

Latest revision as of 19:29, 19 October 2017

Agenda

GOC meeting action item review

https://docs.google.com/document/d/1Y9_Mvqes3op36TPHgfaS7K5FHnGZLgUApghIFYyUKR8/edit#

GOC mailing lists clean up

  • Remove/merge some lists
  • Remove some people for eg from Managers list ?

Proposed Re-Organization of Noctua Documentation

  • Proposed re-organization of Noctua 'landing' page below
  • See Outline on Google docs
  • The old LEGO specification proposal
  • Documentation would be text, screenshots, and videos
    • Note that existing videos hosted on Vimeo are all out-of-date wrt the UI and will need to be re-done
  • Goal is to have concise, up-to-date, production-quality instructions
  • Source for current documentation on Noctua lives here: https://github.com/geneontology/noctua
    • Can we organize all user documentation into a single folder on github?
  • Good news: we can/will re-use existing documentation wherever possible

Minutes

  • On call: Pascale, Kimberley, Chris, Huaiyu, Paul D., Judy, Suzi, David H.

Review action item. (Pascale)

Implementation of new qualifier “causally upstream of or within”, with the more specific children “causally upstream of” and “involved in”

  • Pascale: A ticket was added. Propose to implement by April next year (next GO meeting). This is for the legacy annotations.
  • David: Probably should be done sooner
  • Chris: Add a title of the ticket.
  • David: What is the resource?
  • Chris: New GAF version
  • Priority?
  • Chris: High. Seth and Eric will work on it.
  • Judy: Needs more transparency. Make sure it is done on time.

Regulation term

Multiple qualifier

come up with proposal before the next GO meeting.

CC qualifier and colocalize with

These are two different action items. Can be grouped together.

Protein complex

Come up with a proposal before the next GO meeting


Noctua

  • Data flow - Work with the users.
  • The priority is to push Noctua to the production level. Huaiyu suggested to use this project for a project management exercise. Pascale will work with Chris to set up deadlines for all requirements. Chris pointed out that there was no real requirement documents. Everything is in github tickets. There are two types of tickets: bugs and new features.
  • End-user tool (visualization)


To be finished at the next manager call.

The other two items on the agenda were not discussed, and will be postponed to the next call.