Manager Call 2017-10-18: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
 
(15 intermediate revisions by 3 users not shown)
Line 1: Line 1:
= Agenda =
= Agenda =
== GOC meeting action item review ==
== GOC meeting action item review ==
https://docs.google.com/document/d/1Y9_Mvqes3op36TPHgfaS7K5FHnGZLgUApghIFYyUKR8/edit#
== GOC mailing lists clean up ==
== GOC mailing lists clean up ==
* Remove/merge some lists
* Remove/merge some lists
* Remove some people for eg from Managers list ?
* Remove some people for eg from Managers list ?
== Proposed Re-Organization of Noctua Documentation ==
== Proposed Re-Organization of Noctua Documentation ==
*Proposed re-organization of [http://noctua.berkeleybop.org/ Noctua 'landing' page]
*Proposed re-organization of [http://noctua.berkeleybop.org/ Noctua 'landing' page] below
*See [https://docs.google.com/document/d/1hmYNEP7lWFwWGJbDOHfsfDvT77yBNRH4IW1TAPyhdqg/edit Outline on Google docs]
*The old [http://wiki.geneontology.org/index.php/LEGO_Specification_Proposal LEGO specification proposal]
*Documentation would be text, screenshots, and videos  
*Documentation would be text, screenshots, and videos  
*We will try to re-use existing documentation wherever possible, but the goal is to have concise, up-to-date instructions
**Note that existing videos hosted on Vimeo are all out-of-date wrt the UI and will need to be re-done
**Welcome to Noctua
*Goal is to have concise, up-to-date, production-quality instructions
***Brief 1-2 sentences on GO-CAM and Noctua (what it is)
*Source for current documentation on Noctua lives here:  https://github.com/geneontology/noctua
**Getting Started: The Basics (this section would re-use much of what is currently in the [http://noctua.berkeleybop.org/doc/quick-start-guide QuickStart Guide])
**Can we organize all user documentation into a single folder on github?
***GO-CAM Philosophy
*Good news: we can/will re-use existing documentation wherever possible
****Causal Activity Modeling
 
****Annotons
= Minutes =
***Using Noctua
*On call: Pascale, Kimberley, Chris, Huaiyu, Paul D., Judy, Suzi, David H.
****Getting a Noctua Account
 
*****GitHub
==Review action item. (Pascale)==
*****users.yaml
 
****Creating Basic GO Annotations in Noctua
===Implementation of new qualifier “causally upstream of or within”, with the more specific children “causally upstream of” and “involved in”===
*****Graphical Editor
*Pascale: A ticket was added. Propose to implement by April next year (next GO meeting). This is for the legacy annotations.
*****Table Editor
*David: Probably should be done sooner
****Browsing and Searching Existing Models
*Chris: Add a title of the ticket.
*****Noctua
*David: What is the resource?
*****AmiGO
*Chris: New GAF version
****Incorporating Annotations into Your Database
*Priority?
*****GPAD Annotation Preview
*Chris: High. Seth and Eric will work on it.
*****Downloading Annotation Files from Jenkins
*Judy: Needs more transparency. Make sure it is done on time.
***Advanced Modeling
 
****Creating Causal Models of Biological Processes
===Regulation term===
*****Relations between Functions
 
*****Relations between Functions and Processes
===Multiple qualifier===
****Reasoning and Annotation Inferences
come up with proposal before the next GO meeting.
***FAQs ??  Do we need this or is it just another thing that can go stale??
 
***Feedback
===CC qualifier and colocalize with===
****GitHub trackers
These are two different action items. Can be grouped together.
***Technical Documentation
 
****For Developers
===Protein complex===
*****Noctua development documentation
 
*****Noctua models repository
Come up with a proposal before the next GO meeting
***In Progress
 
****Embeddable widgets
 
****Model display options
===Noctua===
****Network-based enrichment analysis
*Data flow - Work with the users.
*The priority is to push Noctua to the production level. Huaiyu suggested to use this project for a project management exercise. Pascale will work with Chris to set up deadlines for all requirements. Chris pointed out that there was no real requirement documents. Everything is in github tickets. There are two types of tickets: bugs and new features.
*End-user tool (visualization)


== Minutes ==
*On call:


To be finished at the next manager call.


The other two items on the agenda were not discussed, and will be postponed to the next call.




[[Category: GO Managers Meetings]]
[[Category: GO Managers Meetings]]

Latest revision as of 19:29, 19 October 2017

Agenda

GOC meeting action item review

https://docs.google.com/document/d/1Y9_Mvqes3op36TPHgfaS7K5FHnGZLgUApghIFYyUKR8/edit#

GOC mailing lists clean up

  • Remove/merge some lists
  • Remove some people for eg from Managers list ?

Proposed Re-Organization of Noctua Documentation

  • Proposed re-organization of Noctua 'landing' page below
  • See Outline on Google docs
  • The old LEGO specification proposal
  • Documentation would be text, screenshots, and videos
    • Note that existing videos hosted on Vimeo are all out-of-date wrt the UI and will need to be re-done
  • Goal is to have concise, up-to-date, production-quality instructions
  • Source for current documentation on Noctua lives here: https://github.com/geneontology/noctua
    • Can we organize all user documentation into a single folder on github?
  • Good news: we can/will re-use existing documentation wherever possible

Minutes

  • On call: Pascale, Kimberley, Chris, Huaiyu, Paul D., Judy, Suzi, David H.

Review action item. (Pascale)

Implementation of new qualifier “causally upstream of or within”, with the more specific children “causally upstream of” and “involved in”

  • Pascale: A ticket was added. Propose to implement by April next year (next GO meeting). This is for the legacy annotations.
  • David: Probably should be done sooner
  • Chris: Add a title of the ticket.
  • David: What is the resource?
  • Chris: New GAF version
  • Priority?
  • Chris: High. Seth and Eric will work on it.
  • Judy: Needs more transparency. Make sure it is done on time.

Regulation term

Multiple qualifier

come up with proposal before the next GO meeting.

CC qualifier and colocalize with

These are two different action items. Can be grouped together.

Protein complex

Come up with a proposal before the next GO meeting


Noctua

  • Data flow - Work with the users.
  • The priority is to push Noctua to the production level. Huaiyu suggested to use this project for a project management exercise. Pascale will work with Chris to set up deadlines for all requirements. Chris pointed out that there was no real requirement documents. Everything is in github tickets. There are two types of tickets: bugs and new features.
  • End-user tool (visualization)


To be finished at the next manager call.

The other two items on the agenda were not discussed, and will be postponed to the next call.